Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QBS05_RS01065 Genome accession   NZ_CP121795
Coordinates   196983..198047 (-) Length   354 a.a.
NCBI ID   WP_005305178.1    Uniprot ID   H9XWQ5
Organism   Aeromonas dhakensis strain DAMIAN 12594     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 191983..203047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS05_RS01050 - 192146..193393 (-) 1248 WP_005305167.1 aspartate kinase -
  QBS05_RS01055 alaS 193410..196034 (-) 2625 WP_216973417.1 alanine--tRNA ligase -
  QBS05_RS01060 - 196432..196941 (-) 510 WP_279463616.1 regulatory protein RecX -
  QBS05_RS01065 recA 196983..198047 (-) 1065 WP_005305178.1 recombinase RecA Machinery gene
  QBS05_RS01070 pncC 198127..198618 (-) 492 WP_099359893.1 nicotinamide-nucleotide amidase -
  QBS05_RS01075 mutS 198835..201417 (+) 2583 WP_279462371.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38024.61 Da        Isoelectric Point: 4.8988

>NTDB_id=814245 QBS05_RS01065 WP_005305178.1 196983..198047(-) (recA) [Aeromonas dhakensis strain DAMIAN 12594]
MDQNKQKALAAALGQIEKQFGKGSIMRLGDSKTMDIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIA
EAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFQIFYGAGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGKANVMKLFAENKALAGEVEA
KLRELLLSGAAPVEEKPSAAEYDEFEAENEQEFE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=814245 QBS05_RS01065 WP_005305178.1 196983..198047(-) (recA) [Aeromonas dhakensis strain DAMIAN 12594]
ATGGATCAGAACAAACAGAAGGCACTGGCGGCTGCGCTGGGTCAGATTGAAAAGCAGTTCGGCAAAGGTTCCATCATGCG
TCTGGGCGACAGCAAGACCATGGATATCGAAGCCATCTCCACCGGCTCCCTCTCTCTGGACGTGGCGCTGGGGATCGGTG
GTCTGCCGTGCGGTCGTATCGTCGAGATCTACGGCCCGGAATCTTCCGGTAAAACCACGCTGACCCTGCAGGTGATCGCC
GAAGCCCAGAAGAAGGGCAAGACCTGTGCCTTCGTCGATGCGGAGCACGCACTGGATCCCATTTATGCCGCCAAGCTGGG
TGTCAACGTCGACGACCTGCTCATCTCCCAGCCGGACACAGGTGAACAGGCGCTGGAGATCTGCGACATGCTGGTGCGCT
CCAATGCAGTTGACGTCATCATCGTCGACTCCGTGGCGGCCCTGACCCCGAAAGCGGAAATCGAAGGCGAAATGGGTGAC
TCCCACGTCGGCCTGCAGGCTCGTCTGATGTCCCAGGCGCTGCGCAAGCTGACCGCCAACATCAAGAACGCCAACTGCCT
GTGCATCTTCATCAACCAGATCCGGATGAAAATTGGCGTCATGTTCGGCAGCCCGGAGACCACTACCGGTGGTAACGCGC
TCAAGTTCTACGCTTCCGTGCGTCTGGATATCCGCCGTACCGGCGCCATCAAGGAAGGTGACGAAGTGGTCGGTAACGAG
ACCCGCGTCAAGGTAGTGAAGAACAAGGTGGCTCCGCCCTTCAAGCAGGCCGAATTCCAGATCTTCTACGGTGCCGGCAT
CTCCAAAGAGGGCGAGCTGGTGGATCTGGGCGTCAAGCACAAGCTGATCGACAAGGCCGGTGCCTGGTACAGCTACAACG
GCGAGAAGATCGGTCAGGGCAAGGCCAACGTCATGAAGCTGTTCGCCGAAAACAAGGCGCTGGCTGGCGAAGTGGAAGCC
AAACTGCGCGAGTTGCTGCTCTCCGGTGCCGCGCCGGTGGAGGAGAAGCCCTCCGCTGCCGAGTACGACGAGTTTGAAGC
CGAAAACGAACAAGAGTTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H9XWQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

75.921

99.718

0.757
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.921

99.718

0.757
  recA Pseudomonas stutzeri DSM 10701

78.171

95.763

0.749
  recA Acinetobacter baylyi ADP1

71.264

98.305

0.701
  recA Acinetobacter baumannii D1279779

72.647

96.045

0.698
  recA Glaesserella parasuis strain SC1401

69.886

99.435

0.695
  recA Neisseria gonorrhoeae MS11

68.555

99.718

0.684
  recA Neisseria gonorrhoeae MS11

68.555

99.718

0.684
  recA Neisseria gonorrhoeae strain FA1090

68.555

99.718

0.684
  recA Ralstonia pseudosolanacearum GMI1000

72.948

92.938

0.678
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.96

98.023

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.35

93.503

0.602
  recA Helicobacter pylori strain NCTC11637

62.353

96.045

0.599
  recA Helicobacter pylori 26695

61.765

96.045

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

90.678

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

60.479

94.35

0.571
  recA Streptococcus mutans UA159

59.064

96.61

0.571
  recA Streptococcus pneumoniae D39

61.61

91.243

0.562
  recA Streptococcus pneumoniae R6

61.61

91.243

0.562
  recA Streptococcus pneumoniae TIGR4

61.61

91.243

0.562
  recA Streptococcus pneumoniae Rx1

61.61

91.243

0.562
  recA Streptococcus mitis SK321

61.3

91.243

0.559
  recA Streptococcus mitis NCTC 12261

61.3

91.243

0.559
  recA Streptococcus pyogenes NZ131

60.991

91.243

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.451

92.655

0.551
  recA Lactococcus lactis subsp. cremoris KW2

58.204

91.243

0.531