Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QBE02_RS05230 Genome accession   NZ_CP121699
Coordinates   1054464..1055516 (-) Length   350 a.a.
NCBI ID   WP_056227400.1    Uniprot ID   A0A0Q4DUR0
Organism   Microbacterium testaceum strain HW4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1049464..1060516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBE02_RS05220 - 1050892..1053447 (+) 2556 WP_279367411.1 LuxR family transcriptional regulator -
  QBE02_RS05225 - 1053565..1054191 (-) 627 WP_279367412.1 regulatory protein RecX -
  QBE02_RS05230 recA 1054464..1055516 (-) 1053 WP_056227400.1 recombinase RecA Machinery gene
  QBE02_RS05235 - 1055797..1056021 (-) 225 WP_144782060.1 DUF3046 domain-containing protein -
  QBE02_RS05240 - 1056034..1056342 (-) 309 WP_055835145.1 helix-turn-helix transcriptional regulator -
  QBE02_RS05245 - 1056514..1057041 (-) 528 WP_144782061.1 CinA family protein -
  QBE02_RS05250 pgsA 1057038..1057625 (-) 588 WP_279367413.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QBE02_RS05255 - 1057625..1060354 (-) 2730 WP_279367414.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37269.67 Da        Isoelectric Point: 5.8318

>NTDB_id=814013 QBE02_RS05230 WP_056227400.1 1054464..1055516(-) (recA) [Microbacterium testaceum strain HW4]
MPSPAEREKALESALAQIDRQFGKGSVMRLGSDDRAPIETIPTGSVALDVALGIGGLPRGRIIEIYGPESSGKTTLTLHA
IANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLIRSGAIDLVVIDSVAALVPEAEIKGEM
GDSHVGLQARLMSQALRKLTGGLNTTKTTAIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVG
NRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEHAIVKKSGAWYTYEGEQLGQGKENARNFLIKNPDIAEEI
ETKIKTKMGIGGAPAVAPAADDELAARRPA

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=814013 QBE02_RS05230 WP_056227400.1 1054464..1055516(-) (recA) [Microbacterium testaceum strain HW4]
ATGCCCTCACCCGCAGAGCGCGAAAAGGCCCTCGAGTCCGCGCTGGCTCAGATCGATCGGCAGTTCGGAAAGGGCTCGGT
CATGCGACTGGGCAGCGACGACCGTGCGCCCATCGAGACCATCCCCACCGGCTCCGTCGCGCTCGACGTGGCCCTCGGCA
TCGGCGGTCTGCCTCGCGGCCGCATCATCGAGATCTACGGCCCGGAGTCGTCCGGAAAGACGACCCTCACGCTTCACGCC
ATCGCCAATGCGCAGCGCGCCGGTGGCATCGCGGCGTTCATCGACGCTGAGCACGCTCTCGACCCCGAGTACGCGAAGAA
GCTCGGCGTTGACATCGACGCGCTTCTCGTGTCTCAGCCCGACACCGGCGAGCAGGCCCTCGAGATCGCCGACATGCTGA
TCCGCTCCGGTGCGATCGACCTCGTCGTCATCGACTCGGTCGCCGCCCTCGTCCCCGAGGCCGAGATCAAGGGCGAGATG
GGCGATTCGCACGTCGGACTCCAGGCCCGCCTCATGTCGCAAGCTCTGCGAAAGCTGACCGGTGGGTTGAACACCACGAA
GACCACCGCGATCTTCATCAACCAGTTGCGCGAGAAGATCGGTGTCTTCTTCGGTTCCCCCGAGACCACGGCCGGCGGAA
AGGCGCTCAAGTTCTACGCGTCGGTGCGCCTCGACATCCGTCGCATCGAGACGCTGAAGGACGGCACCGAAGCCGTCGGC
AACCGCACGCGTGTCAAGGTCGTCAAGAACAAGATGGCCCCACCCTTCAAGCAGGCAGAATTCGACATCCTTTACGGCGT
CGGCATCTCGCGCGAGGGGAGCCTCATCGACTTCGGTGTCGAGCACGCCATCGTCAAGAAGTCGGGCGCCTGGTACACCT
ACGAGGGCGAGCAGCTCGGACAGGGCAAAGAGAACGCCCGTAACTTCCTCATCAAGAACCCCGACATCGCCGAAGAGATC
GAGACCAAGATCAAGACCAAGATGGGCATCGGCGGTGCGCCCGCGGTCGCTCCGGCGGCGGACGACGAGTTGGCCGCGCG
TCGCCCGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q4DUR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.469

96.286

0.64
  recA Acinetobacter baumannii D1279779

65.579

96.286

0.631
  recA Bacillus subtilis subsp. subtilis str. 168

67.485

93.143

0.629
  recA Neisseria gonorrhoeae MS11

63.478

98.571

0.626
  recA Neisseria gonorrhoeae strain FA1090

63.478

98.571

0.626
  recA Neisseria gonorrhoeae MS11

63.478

98.571

0.626
  recA Acinetobacter baylyi ADP1

67.081

92

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.905

96.571

0.617
  recA Ralstonia pseudosolanacearum GMI1000

65.951

93.143

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.085

91.143

0.611
  recA Vibrio cholerae strain A1552

67.085

91.143

0.611
  recA Streptococcus mitis NCTC 12261

61.561

98.857

0.609
  recA Streptococcus pyogenes NZ131

60.684

100

0.609
  recA Helicobacter pylori strain NCTC11637

61.739

98.571

0.609
  recA Helicobacter pylori 26695

61.739

98.571

0.609
  recA Streptococcus mitis SK321

61.272

98.857

0.606
  recA Latilactobacillus sakei subsp. sakei 23K

62.242

96.857

0.603
  recA Streptococcus pneumoniae R6

63.333

94.286

0.597
  recA Streptococcus pneumoniae TIGR4

63.333

94.286

0.597
  recA Lactococcus lactis subsp. cremoris KW2

63.333

94.286

0.597
  recA Streptococcus pneumoniae Rx1

63.333

94.286

0.597
  recA Streptococcus pneumoniae D39

63.333

94.286

0.597
  recA Glaesserella parasuis strain SC1401

60.472

96.857

0.586
  recA Streptococcus mutans UA159

62.006

94

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.006

94

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.062

91.429

0.54