Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   RW107_RS08395 Genome accession   NZ_CP136257
Coordinates   1614417..1614866 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain A9     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1609417..1619866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RW107_RS08355 (RW107_08355) ctaE 1609434..1610057 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  RW107_RS08360 (RW107_08360) ctaF 1610060..1610392 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  RW107_RS08365 (RW107_08365) ctaG 1610419..1611312 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  RW107_RS08370 (RW107_08370) ylbA 1611344..1611706 (-) 363 WP_003232238.1 YugN family protein -
  RW107_RS08375 (RW107_08375) ylbB 1611846..1612292 (+) 447 WP_003221362.1 CBS domain-containing protein -
  RW107_RS08380 (RW107_08380) ylbC 1612376..1613416 (+) 1041 WP_041850862.1 CAP domain-containing protein -
  RW107_RS08385 (RW107_08385) ylbD 1613648..1614046 (+) 399 WP_003232233.1 YlbD family protein -
  RW107_RS08390 (RW107_08390) ylbE 1614062..1614301 (+) 240 WP_003232231.1 YlbE-like family protein -
  RW107_RS08395 (RW107_08395) ylbF 1614417..1614866 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  RW107_RS08400 (RW107_08400) ylbG 1614921..1615193 (+) 273 WP_015715839.1 YlbG family protein -
  RW107_RS08405 (RW107_08405) rsmD 1615516..1616070 (+) 555 WP_029317761.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  RW107_RS08410 (RW107_08410) coaD 1616075..1616560 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  RW107_RS08415 (RW107_08415) spoVV 1616571..1617797 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  RW107_RS08420 (RW107_08420) ylbK 1617978..1618760 (+) 783 WP_003232221.1 patatin family protein -
  RW107_RS08425 (RW107_08425) sepM 1618762..1619787 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=814013 RW107_RS08395 WP_003221370.1 1614417..1614866(+) (ylbF) [Bacillus subtilis strain A9]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=814013 RW107_RS08395 WP_003221370.1 1614417..1614866(+) (ylbF) [Bacillus subtilis strain A9]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1