Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QBE03_RS13310 Genome accession   NZ_CP121698
Coordinates   3069044..3070081 (-) Length   345 a.a.
NCBI ID   WP_017910627.1    Uniprot ID   -
Organism   Xanthomonas sacchari strain DJ16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3064044..3075081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBE03_RS13285 - 3064786..3065148 (+) 363 WP_279361029.1 hypothetical protein -
  QBE03_RS13295 csrA 3065326..3065538 (-) 213 WP_010341308.1 carbon storage regulator CsrA -
  QBE03_RS13300 alaS 3065675..3068326 (-) 2652 WP_279361033.1 alanine--tRNA ligase -
  QBE03_RS13305 recX 3068433..3068927 (-) 495 WP_017914259.1 recombination regulator RecX -
  QBE03_RS13310 recA 3069044..3070081 (-) 1038 WP_017910627.1 recombinase RecA Machinery gene
  QBE03_RS13315 lexA 3070278..3070913 (-) 636 WP_017910626.1 transcriptional repressor LexA -
  QBE03_RS13320 ubiB 3071248..3072924 (-) 1677 WP_152180812.1 2-polyprenylphenol 6-hydroxylase -
  QBE03_RS13325 - 3072959..3073453 (-) 495 WP_017914255.1 CinA family protein -
  QBE03_RS13330 hflX 3073620..3074945 (-) 1326 WP_026143930.1 ribosome rescue GTPase HflX -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37106.61 Da        Isoelectric Point: 4.9648

>NTDB_id=814006 QBE03_RS13310 WP_017910627.1 3069044..3070081(-) (recA) [Xanthomonas sacchari strain DJ16]
MDENKKRALAAALSQIEKQFGKGSVMRMGDRVIEAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKNGGTAAFIDAEHALDPIYAAKLGVNVDELLLSQPDTGEQALEIADMLVRSGSVDIVVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGSERIGQGKDNARGYLRDNPQVAAKL
ESELREKFQPTEIAPSEAEAEDDDA

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=814006 QBE03_RS13310 WP_017910627.1 3069044..3070081(-) (recA) [Xanthomonas sacchari strain DJ16]
ATGGACGAGAACAAGAAGCGCGCGCTCGCCGCCGCCCTGAGCCAGATCGAGAAGCAGTTCGGCAAGGGCTCGGTGATGCG
GATGGGCGATCGCGTCATCGAAGCGGTGGAAGTGATTCCGACCGGCTCGCTGATGCTGGACATCGCGCTGGGCATCGGCG
GCCTGCCGAAGGGCCGCGTGGTCGAGATCTACGGTCCGGAATCCTCGGGCAAGACCACCCTGACCTTGCAGGCCATCGCG
CAGTGCCAGAAGAACGGCGGCACCGCCGCGTTCATCGACGCCGAGCACGCGCTGGACCCGATCTACGCCGCCAAGCTGGG
CGTCAACGTCGACGAGCTGCTGCTGTCGCAGCCGGACACCGGCGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGCT
CGGGCTCGGTGGACATCGTGGTGGTCGACTCGGTCGCCGCGCTGACTCCCAAGGCCGAAATCGAAGGCGAGATGGGCGAC
CAGTTGCCGGGCCTGCAGGCGCGCCTGATGAGCCAGGCGCTGCGCAAGCTCACCGGCAACATCAAGCGCTCCAACACCCT
GGTGGTGTTCATCAACCAGTTGCGCATGAAGATCGGCGTGATGATGCCGGGCCAGAGCCCGGAAACCACTACCGGCGGCA
ACGCGCTGAAGTTCTATGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCGATCAAGAAGGGTGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTCGTCAAGAACAAGTTGGCGCCGCCGTTCAAGCAGGTCGTCACCGAAATCCTCTACGGCGA
GGGCATCAGCCGCGAGGGCGAACTGATCGACATGGGCGTGGAAGCCAAATTGGTCGAGAAGGCCGGTGCCTGGTACAGCT
ACGGCAGCGAGCGCATCGGCCAGGGCAAGGACAACGCCCGCGGTTACCTGCGCGACAACCCGCAGGTCGCGGCCAAGCTG
GAAAGCGAGCTGCGCGAGAAGTTCCAGCCCACGGAAATCGCCCCGAGCGAGGCCGAGGCGGAAGACGACGACGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

69.364

100

0.696
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.364

100

0.696
  recA Acinetobacter baylyi ADP1

72.866

95.072

0.693
  recA Acinetobacter baumannii D1279779

72.205

95.942

0.693
  recA Pseudomonas stutzeri DSM 10701

72.205

95.942

0.693
  recA Ralstonia pseudosolanacearum GMI1000

75

91.594

0.687
  recA Neisseria gonorrhoeae MS11

69.939

94.493

0.661
  recA Neisseria gonorrhoeae MS11

69.939

94.493

0.661
  recA Neisseria gonorrhoeae strain FA1090

69.939

94.493

0.661
  recA Glaesserella parasuis strain SC1401

66.087

100

0.661
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.473

96.812

0.614
  recA Streptococcus mutans UA159

59.259

100

0.603
  recA Latilactobacillus sakei subsp. sakei 23K

59.942

99.13

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

63.077

94.203

0.594
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.75

92.754

0.591
  recA Streptococcus mitis SK321

62.195

95.072

0.591
  recA Helicobacter pylori strain NCTC11637

61.145

96.232

0.588
  recA Streptococcus pyogenes NZ131

61.515

95.652

0.588
  recA Streptococcus pneumoniae R6

61.89

95.072

0.588
  recA Streptococcus pneumoniae TIGR4

61.89

95.072

0.588
  recA Streptococcus pneumoniae Rx1

61.89

95.072

0.588
  recA Streptococcus pneumoniae D39

61.89

95.072

0.588
  recA Streptococcus mitis NCTC 12261

61.585

95.072

0.586
  recA Helicobacter pylori 26695

60.843

96.232

0.586
  recA Lactococcus lactis subsp. cremoris KW2

60

94.203

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.509

94.493

0.562