Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   P9875_RS27365 Genome accession   NZ_CP121464
Coordinates   6029769..6030872 (-) Length   367 a.a.
NCBI ID   WP_034746069.1    Uniprot ID   -
Organism   Janthinobacterium rivuli strain DEMB2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6024769..6035872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9875_RS27345 (P9875_27345) sucC 6025342..6026511 (-) 1170 WP_034746081.1 ADP-forming succinate--CoA ligase subunit beta -
  P9875_RS27350 (P9875_27350) - 6026584..6027144 (-) 561 WP_035822519.1 DUF2889 domain-containing protein -
  P9875_RS27355 (P9875_27355) - 6027423..6028961 (-) 1539 WP_278317150.1 class I SAM-dependent methyltransferase -
  P9875_RS27360 (P9875_27360) recX 6029110..6029565 (-) 456 WP_278317151.1 recombination regulator RecX -
  P9875_RS27365 (P9875_27365) recA 6029769..6030872 (-) 1104 WP_034746069.1 recombinase RecA Machinery gene
  P9875_RS27370 (P9875_27370) - 6031127..6031861 (+) 735 WP_099401744.1 response regulator transcription factor -
  P9875_RS27375 (P9875_27375) - 6031858..6033396 (+) 1539 WP_278317152.1 sensor histidine kinase -
  P9875_RS27380 (P9875_27380) - 6033389..6033703 (+) 315 WP_219308298.1 DUF4212 domain-containing protein -
  P9875_RS27385 (P9875_27385) - 6033700..6035748 (+) 2049 WP_278317153.1 sodium:solute symporter family protein -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39024.68 Da        Isoelectric Point: 6.3119

>NTDB_id=812117 P9875_RS27365 WP_034746069.1 6029769..6030872(-) (recA) [Janthinobacterium rivuli strain DEMB2]
MDDKKAVVPASEKAKALAAALAQIEKQFGKGSVMRMDASAPIEEVQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK
TTLTLQTIAEMQKLGGTCAFIDAEHALDVGYAQKLGVNLHELLISQPDTGEQALEICDALVRSGSVDLVVIDSVAALTPR
AEIEGDMGDSLPGLQARLMSQALRKLTGSINRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSIK
SGDEVIGNETKVKVVKNKIAPPFKEAHFDILYGAGTSREGEILDLGSDAKIVEKSGSWYSYNGERIGQGKDNARAFLQER
PALAREIENKVRASLGVRELPPLAAEKPEKADKAADKAAKAAEAKPE

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=812117 P9875_RS27365 WP_034746069.1 6029769..6030872(-) (recA) [Janthinobacterium rivuli strain DEMB2]
ATGGACGATAAAAAAGCTGTAGTACCCGCATCGGAAAAAGCCAAGGCGCTCGCCGCCGCACTGGCGCAGATCGAGAAGCA
GTTTGGCAAAGGTTCGGTCATGCGCATGGATGCCAGCGCACCGATCGAAGAAGTGCAAGTCGTGTCGACCGGTTCGCTCG
GCCTCGATATCGCCCTGGGCGTGGGCGGCTTGCCGCGCGGCCGCGTGGTGGAGATCTACGGTCCGGAATCGTCGGGTAAA
ACCACCCTGACCCTGCAAACCATCGCCGAAATGCAAAAACTGGGCGGCACTTGCGCCTTTATCGATGCCGAGCACGCGCT
CGACGTCGGTTACGCGCAAAAGCTGGGCGTGAACCTGCATGAATTGCTGATCTCGCAACCGGACACGGGCGAGCAGGCGC
TGGAAATCTGCGACGCCCTCGTGCGTTCGGGCAGTGTCGACCTCGTCGTCATCGACTCCGTGGCCGCACTGACGCCACGC
GCCGAGATCGAAGGCGACATGGGCGATTCCCTGCCAGGCCTGCAAGCGCGTCTGATGTCGCAAGCCCTGCGCAAGCTGAC
CGGTTCCATCAACCGCACGAATACCCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCC
CGGAAACGACCACCGGCGGTAACGCCCTGAAATTCTACGCCTCCGTGCGCCTGGATATCCGCCGCACCGGCTCGATCAAG
TCCGGCGATGAAGTGATCGGTAACGAAACCAAGGTCAAGGTCGTCAAGAACAAGATCGCGCCACCGTTCAAGGAAGCGCA
CTTCGACATCCTGTACGGCGCCGGCACCTCGCGCGAAGGCGAAATCCTGGACCTGGGTTCGGATGCCAAGATCGTGGAAA
AATCCGGTTCGTGGTACAGCTACAACGGCGAACGCATCGGCCAGGGCAAGGACAACGCCCGCGCCTTCCTGCAAGAGCGT
CCGGCGCTGGCCCGCGAAATCGAAAACAAGGTCCGCGCGTCGCTGGGCGTGCGCGAACTGCCGCCGCTGGCTGCTGAAAA
GCCGGAAAAAGCCGATAAAGCCGCCGACAAGGCTGCCAAGGCTGCGGAAGCCAAGCCAGAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.929

91.553

0.768
  recA Neisseria gonorrhoeae MS11

72.866

89.373

0.651
  recA Neisseria gonorrhoeae MS11

72.866

89.373

0.651
  recA Neisseria gonorrhoeae strain FA1090

72.866

89.373

0.651
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.412

92.643

0.643
  recA Vibrio cholerae strain A1552

69.412

92.643

0.643
  recA Glaesserella parasuis strain SC1401

66.571

94.55

0.629
  recA Pseudomonas stutzeri DSM 10701

70.898

88.011

0.624
  recA Acinetobacter baylyi ADP1

70.588

88.011

0.621
  recA Acinetobacter baumannii D1279779

70.279

88.011

0.619
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.366

90.736

0.602
  recA Helicobacter pylori 26695

62.391

93.46

0.583
  recA Streptococcus mutans UA159

60.34

96.185

0.58
  recA Helicobacter pylori strain NCTC11637

62.099

93.46

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

89.101

0.575
  recA Streptococcus mitis NCTC 12261

60.29

94.005

0.567
  recA Streptococcus pyogenes NZ131

63.222

89.646

0.567
  recA Streptococcus pneumoniae TIGR4

62.236

90.191

0.561
  recA Streptococcus pneumoniae Rx1

62.236

90.191

0.561
  recA Streptococcus pneumoniae D39

62.236

90.191

0.561
  recA Streptococcus pneumoniae R6

62.236

90.191

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.997

89.101

0.561
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.19

88.828

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

62.424

89.918

0.561
  recA Streptococcus mitis SK321

61.934

90.191

0.559
  recA Lactococcus lactis subsp. cremoris KW2

61.631

90.191

0.556