Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PSm6_RS03550 Genome accession   NZ_AP023081
Coordinates   743878..744927 (-) Length   349 a.a.
NCBI ID   WP_021222513.1    Uniprot ID   A0AAU7Y1T8
Organism   Pseudomonas solani strain Sm006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 738878..749927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSm6_RS03530 (PSm6_07070) - 741269..741685 (+) 417 WP_021222517.1 quorum-sensing-regulated virulence factor family protein -
  PSm6_RS03535 (PSm6_07080) - 741697..741891 (-) 195 WP_021222516.1 hypothetical protein -
  PSm6_RS03540 (PSm6_07090) - 742254..743327 (+) 1074 WP_265169548.1 TIGR00730 family Rossman fold protein -
  PSm6_RS03545 (PSm6_07100) recX 743405..743872 (-) 468 WP_021222514.1 recombination regulator RecX -
  PSm6_RS03550 (PSm6_07110) recA 743878..744927 (-) 1050 WP_021222513.1 recombinase RecA Machinery gene
  PSm6_RS03555 (PSm6_07120) - 745014..745526 (-) 513 WP_265169550.1 CinA family protein -
  PSm6_RS03560 (PSm6_07130) mutS 745656..748235 (+) 2580 WP_043243638.1 DNA mismatch repair protein MutS -
  PSm6_RS03565 (PSm6_07140) fdxA 748374..748697 (+) 324 WP_021219412.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37412.84 Da        Isoelectric Point: 5.5564

>NTDB_id=81198 PSm6_RS03550 WP_021222513.1 743878..744927(-) (recA) [Pseudomonas solani strain Sm006]
MDENKKRALSAALGQIEKQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
SHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEGEEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQQGILEKSGAWYSYQGNKIGQGKANSAKYLEDNPEVGKAVEK
LIREQLLNRDAVKPDAASAKEVAETEADF

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=81198 PSm6_RS03550 WP_021222513.1 743878..744927(-) (recA) [Pseudomonas solani strain Sm006]
ATGGACGAGAACAAGAAGCGTGCTTTGTCGGCTGCCCTGGGCCAGATCGAGAAGCAGTTCGGCAAGGGCGCGGTCATGCG
CATGGGCGATCATGATCGCCAGGCCATTCCGGCTATTTCCACCGGCTCCCTCGGCCTGGATATCGCTCTCGGCATCGGCG
GCCTGCCCAAGGGCCGTATCGTGGAAATCTACGGTCCGGAGTCTTCGGGCAAGACGACCCTCACCCTGTCCGTGATCGCC
GAAGCCCAGAAGATGGGCGCCACCTGCGCCTTCGTCGACGCTGAACACGCACTCGATCCGGACTACGCCGGCAAGCTCGG
CGTGAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAATGCCGTTGACGTGATCATCGTCGACTCCGTCGCGGCTCTCGTGCCCAAGGCCGAGATCGAAGGCGAGATGGGCGAC
TCCCACGTTGGTCTGCAAGCCCGCCTCATGTCCCAGGCGCTGCGCAAGATCACCGGCAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACCGGTGGTAACGCCC
TGAAGTTCTACGCCTCCGTCCGCCTCGACATCCGTCGCATCGGCGCGGTGAAGGAAGGCGAGGAAGTGGTGGGTAGCGAA
ACCCGCGTCAAGGTCGTGAAGAACAAGGTCGCTCCGCCTTTCCGTCAGGCCGAGTTCCAGATCCTCTACGGCAAGGGCAT
CTACCGCAACGGCGAGATCATCGATCTGGGCGTACAGCAGGGCATCCTGGAGAAATCCGGCGCCTGGTACAGCTACCAGG
GCAACAAGATCGGCCAGGGCAAGGCCAATTCCGCCAAGTACCTGGAAGACAATCCTGAAGTGGGCAAGGCCGTCGAGAAG
CTGATTCGCGAGCAACTGCTCAATCGCGATGCAGTCAAGCCTGATGCCGCTTCCGCCAAGGAAGTCGCTGAAACCGAAGC
CGACTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

89.368

99.713

0.891
  recA Acinetobacter baylyi ADP1

74.499

100

0.745
  recA Acinetobacter baumannii D1279779

77.37

93.696

0.725
  recA Vibrio cholerae strain A1552

75.305

93.983

0.708
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.305

93.983

0.708
  recA Glaesserella parasuis strain SC1401

73.148

92.837

0.679
  recA Neisseria gonorrhoeae MS11

71.296

92.837

0.662
  recA Neisseria gonorrhoeae MS11

71.296

92.837

0.662
  recA Neisseria gonorrhoeae strain FA1090

71.296

92.837

0.662
  recA Ralstonia pseudosolanacearum GMI1000

73.955

89.112

0.659
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

93.696

0.607
  recA Helicobacter pylori strain NCTC11637

62.687

95.989

0.602
  recA Helicobacter pylori 26695

62.09

95.989

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.275

95.702

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

62.112

92.264

0.573
  recA Streptococcus mutans UA159

56.534

100

0.57
  recA Streptococcus mitis SK321

56.484

99.427

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

60.436

91.977

0.556
  recA Streptococcus mitis NCTC 12261

58.589

93.41

0.547
  recA Streptococcus pneumoniae Rx1

58.282

93.41

0.544
  recA Streptococcus pneumoniae D39

58.282

93.41

0.544
  recA Streptococcus pneumoniae R6

58.282

93.41

0.544
  recA Streptococcus pneumoniae TIGR4

58.282

93.41

0.544
  recA Streptococcus pyogenes NZ131

58.154

93.123

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.748

93.41

0.53
  recA Lactococcus lactis subsp. cremoris KW2

56.966

92.55

0.527

Multiple sequence alignment