Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   P3S51_RS05835 Genome accession   NZ_CP121303
Coordinates   1178621..1179661 (-) Length   346 a.a.
NCBI ID   WP_154772919.1    Uniprot ID   A0A6L6GFN5
Organism   Acinetobacter sp. ANC 7201     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1177171..1177833 1178621..1179661 flank 788


Gene organization within MGE regions


Location: 1177171..1179661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3S51_RS05825 (P3S51_05825) - 1177171..1177833 (+) 663 WP_152875444.1 IS1595 family transposase -
  P3S51_RS05830 (P3S51_05830) - 1177904..1178518 (-) 615 WP_311918401.1 regulatory protein RecX -
  P3S51_RS05835 (P3S51_05835) recA 1178621..1179661 (-) 1041 WP_154772919.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37546.00 Da        Isoelectric Point: 4.8625

>NTDB_id=811744 P3S51_RS05835 WP_154772919.1 1178621..1179661(-) (recA) [Acinetobacter sp. ANC 7201]
MDENKGKALNAALSQIEKQFGKNTIMRLGDNAVQAVEAISTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDMIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGQVKEGDEIVGSE
TKVKVVKNKMAPPFREALFQILYGKGVNHLGELIDLAVQQEIVQKAGAWYSYQGDKIGQGKNNTIRYLEEHKELAETIEK
LVRDQLLTIGTVVEDTDEQEPDLLDA

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=811744 P3S51_RS05835 WP_154772919.1 1178621..1179661(-) (recA) [Acinetobacter sp. ANC 7201]
ATGGATGAGAATAAAGGTAAAGCGCTGAATGCTGCACTTAGCCAAATTGAAAAACAATTTGGTAAGAACACAATTATGCG
TTTGGGTGATAATGCTGTACAAGCTGTAGAAGCAATCTCAACAGGTTCTTTGACTCTTGATATCGCACTTGGTATTGGCG
GCTTACCTAAAGGTCGTATCGTAGAAATCTACGGTCCAGAATCTTCAGGTAAAACAACAATGACATTACAAGCGATTGCT
GAATGTCAAAAAGCTGGTGGTACATGTGCTTTCATCGATGCAGAACATGCACTTGATCCGCAATATGCACGTAAACTTGG
CGTAGATATCGACAATTTACTTGTTTCTCAACCAGATAACGGTGAACAAGCGCTTGAAATTGCAGATATGCTTGTTCGCT
CTGGCGCAATCGACATGATCGTTGTCGATTCTGTAGCTGCACTTACTCCTCGTGCGGAAATTGAAGGCGAAATGGGCGAC
TCTCACATGGGTCTACAAGCGCGTTTAATGAGCCAAGCGCTACGTAAAATTACAGGTAATGCAAAGCGTTCTAACTGTAT
GGTGATCTTCATTAACCAAATTCGTATGAAAATTGGTGTAATGTTTGGTAGCCCAGAAACAACAACTGGTGGTAACGCAC
TAAAATTCTATGCTTCTGTACGTCTTGATATCCGTCGTGTTGGTCAAGTAAAAGAAGGTGATGAAATTGTTGGTTCTGAA
ACAAAAGTTAAAGTTGTTAAGAACAAAATGGCACCTCCTTTCCGTGAAGCATTATTCCAAATTCTTTATGGTAAAGGCGT
AAATCATCTTGGTGAACTTATCGACCTTGCTGTTCAACAAGAAATTGTTCAAAAAGCAGGTGCTTGGTATTCGTATCAAG
GCGATAAAATTGGTCAAGGCAAAAACAATACCATTCGCTATTTAGAAGAACATAAAGAATTGGCTGAAACAATTGAAAAA
TTAGTTCGCGATCAACTTCTAACAATTGGCACTGTTGTAGAAGATACAGATGAGCAAGAACCTGATCTTTTAGATGCTTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L6GFN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

89.306

100

0.893
  recA Acinetobacter baylyi ADP1

87.966

100

0.887
  recA Pseudomonas stutzeri DSM 10701

73.699

100

0.737
  recA Vibrio cholerae strain A1552

74.695

94.798

0.708
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.695

94.798

0.708
  recA Glaesserella parasuis strain SC1401

71.296

93.642

0.668
  recA Ralstonia pseudosolanacearum GMI1000

72.99

89.884

0.656
  recA Neisseria gonorrhoeae MS11

64.943

100

0.653
  recA Neisseria gonorrhoeae MS11

64.943

100

0.653
  recA Neisseria gonorrhoeae strain FA1090

64.943

100

0.653
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.647

98.266

0.616
  recA Helicobacter pylori strain NCTC11637

63.914

94.509

0.604
  recA Helicobacter pylori 26695

63.609

94.509

0.601
  recA Streptococcus pneumoniae TIGR4

61.905

97.11

0.601
  recA Streptococcus pneumoniae Rx1

61.905

97.11

0.601
  recA Streptococcus pneumoniae D39

61.905

97.11

0.601
  recA Streptococcus pneumoniae R6

61.905

97.11

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.538

95.665

0.598
  recA Streptococcus mutans UA159

59.767

99.133

0.592
  recA Streptococcus mitis SK321

62.037

93.642

0.581
  recA Streptococcus mitis NCTC 12261

62.037

93.642

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.656

94.22

0.581
  recA Streptococcus pyogenes NZ131

61.35

94.22

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

62.264

91.908

0.572
  recA Lactococcus lactis subsp. cremoris KW2

59.502

92.775

0.552
  recA Latilactobacillus sakei subsp. sakei 23K

60.127

91.329

0.549