Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   P8R55_RS08005 Genome accession   NZ_CP121285
Coordinates   1630872..1631954 (-) Length   360 a.a.
NCBI ID   WP_069168592.1    Uniprot ID   A0A9X8VPN7
Organism   Lactobacillus johnsonii strain L16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1625872..1636954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R55_RS07985 (P8R55_07965) - 1625886..1627073 (-) 1188 WP_407325251.1 DEAD/DEAH box helicase family protein -
  P8R55_RS07990 (P8R55_07970) - 1627196..1627861 (+) 666 WP_004897727.1 YigZ family protein -
  P8R55_RS07995 (P8R55_07975) - 1627879..1629021 (-) 1143 WP_407325252.1 glycosyltransferase family 4 protein -
  P8R55_RS08000 (P8R55_07980) rny 1629123..1630745 (-) 1623 WP_004897729.1 ribonuclease Y -
  P8R55_RS08005 (P8R55_07985) recA 1630872..1631954 (-) 1083 WP_069168592.1 recombinase RecA Machinery gene
  P8R55_RS08010 (P8R55_07990) pgsA 1632117..1632680 (-) 564 WP_004893865.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  P8R55_RS08015 (P8R55_07995) - 1632680..1633720 (-) 1041 WP_014567672.1 RodZ family helix-turn-helix domain-containing protein -
  P8R55_RS08020 (P8R55_08000) ymfI 1633779..1634507 (-) 729 WP_014567673.1 elongation factor P 5-aminopentanone reductase -
  P8R55_RS08025 (P8R55_08005) - 1634508..1635743 (-) 1236 WP_014567674.1 pitrilysin family protein -
  P8R55_RS08030 (P8R55_08010) - 1635740..1636954 (-) 1215 WP_014567675.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 39015.48 Da        Isoelectric Point: 5.6252

>NTDB_id=811610 P8R55_RS08005 WP_069168592.1 1630872..1631954(-) (recA) [Lactobacillus johnsonii strain L16]
MAKDDKKKALDIALKKIEKDFGKGAVMRMGEKVDTQISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGDMG
DSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVIGN
RVKLKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDMAADKDIIKKAGSWYSYGDDRIGQGRENAKQYLEEHPDVYEEVK
EKVREAYGIDAKAIEERENPERVKQDKEVPVNKDASDEKK

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=811610 P8R55_RS08005 WP_069168592.1 1630872..1631954(-) (recA) [Lactobacillus johnsonii strain L16]
TTGGCTAAAGATGATAAAAAGAAGGCTTTAGACATTGCCTTAAAGAAGATTGAAAAAGACTTTGGAAAAGGCGCAGTGAT
GCGCATGGGTGAAAAAGTAGACACTCAAATTTCCACTATTCCTTCCGGTTCACTAGCTTTAGATGCAGCTCTTGGAGTTG
GTGGCTATCCTCGTGGACGAATTATTGAAGTATATGGACCAGAAAGTTCTGGTAAAACAACTGTGGCTCTTCATGCTGTT
GCAGAAGTTCAGAAGCGTGGAGGAACGGCAGCTTATATCGATGCGGAAAATGCGATGGATCCTGCTTATGCCGAAGCATT
AGGTGTTGATATTGATTCCTTAATTTTATCTCAACCAAACACTGGTGAAGAAGGTCTGCAAATTGCAGATACGCTTATTG
CGAGTGGTGCAATTGATATCTTAGTTGTGGATTCCGTGGCTGCGTTAGTACCAAGAGCCGAAATTGACGGTGACATGGGA
GATTCACATGTTGGTTTACAAGCCAGATTAATGAGTCAGGCTTTACGTAAACTCTCAGGAAATATCTCTAAAACTAAAAC
TATTGCTGTTTTCATTAACCAAATTCGTGAAAAAGTTGGGGTTATGTTTGGAAATCCAGAAACTACTCCTGGTGGACGTG
CTTTGAAGTTTTACTCTACGATTAGATTAGAAGTACGTAGAGCAGAACAAATTAAACAAGGATCAGACGTAATTGGTAAC
CGAGTTAAATTAAAGGTTGTAAAAAATAAAGTTGCTCCTCCATTTAAAGTGGCAGAAGTCGATATCATGTATGGGAAAGG
AATTTCTCAAACTGGTGAGTTAATTGATATGGCTGCTGATAAAGATATCATTAAGAAAGCTGGCTCGTGGTATTCATATG
GGGATGATCGCATTGGACAAGGCCGCGAGAATGCTAAGCAATATCTAGAAGAGCATCCTGATGTTTACGAAGAAGTAAAA
GAAAAAGTTCGTGAAGCTTATGGAATTGATGCTAAAGCAATTGAAGAACGAGAAAATCCTGAAAGGGTAAAACAGGACAA
GGAAGTACCAGTAAACAAAGATGCTTCCGATGAAAAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

76.602

99.722

0.764
  recA Bacillus subtilis subsp. subtilis str. 168

73.03

91.667

0.669
  recA Streptococcus mutans UA159

66.011

98.889

0.653
  recA Streptococcus pneumoniae R6

65

100

0.65
  recA Streptococcus pneumoniae TIGR4

65

100

0.65
  recA Streptococcus pneumoniae Rx1

65

100

0.65
  recA Streptococcus pneumoniae D39

65

100

0.65
  recA Streptococcus mitis NCTC 12261

66.571

96.389

0.642
  recA Streptococcus pyogenes NZ131

70.213

91.389

0.642
  recA Streptococcus mitis SK321

68.693

91.389

0.628
  recA Lactococcus lactis subsp. cremoris KW2

67.173

91.389

0.614
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.11

91.111

0.575
  recA Neisseria gonorrhoeae strain FA1090

61.261

92.5

0.567
  recA Neisseria gonorrhoeae MS11

61.261

92.5

0.567
  recA Neisseria gonorrhoeae MS11

61.261

92.5

0.567
  recA Acinetobacter baumannii D1279779

57.602

95

0.547
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

89.722

0.539
  recA Pseudomonas stutzeri DSM 10701

54.237

98.333

0.533
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.055

91.389

0.531
  recA Acinetobacter baylyi ADP1

59.317

89.444

0.531
  recA Helicobacter pylori 26695

58.589

90.556

0.531
  recA Helicobacter pylori strain NCTC11637

58.589

90.556

0.531
  recA Vibrio cholerae O1 biovar El Tor strain E7946

56.832

89.444

0.508
  recA Vibrio cholerae strain A1552

56.832

89.444

0.508
  recA Glaesserella parasuis strain SC1401

54.985

91.944

0.506
  recA Ralstonia pseudosolanacearum GMI1000

58.147

86.944

0.506