Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   P8R59_RS12100 Genome accession   NZ_CP121274
Coordinates   2407836..2408888 (+) Length   350 a.a.
NCBI ID   WP_278101271.1    Uniprot ID   -
Organism   Microbacterium proteolyticum strain ustc     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2402836..2413888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R59_RS12075 - 2403022..2405709 (+) 2688 WP_278101268.1 DNA translocase FtsK -
  P8R59_RS12080 pgsA 2405709..2406296 (+) 588 WP_278101269.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  P8R59_RS12085 - 2406293..2406820 (+) 528 WP_278101270.1 CinA family protein -
  P8R59_RS12090 - 2406981..2407289 (+) 309 WP_076490831.1 helix-turn-helix transcriptional regulator -
  P8R59_RS12095 - 2407299..2407523 (+) 225 WP_077050169.1 DUF3046 domain-containing protein -
  P8R59_RS12100 recA 2407836..2408888 (+) 1053 WP_278101271.1 recombinase RecA Machinery gene
  P8R59_RS12105 - 2408888..2409652 (+) 765 WP_278101272.1 regulatory protein RecX -
  P8R59_RS12110 miaB 2409725..2411275 (+) 1551 WP_278101273.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  P8R59_RS12115 miaA 2411272..2412234 (+) 963 WP_278101274.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  P8R59_RS12120 - 2412231..2412671 (+) 441 WP_278101275.1 GNAT family acetyltransferase -
  P8R59_RS12125 dapF 2412718..2413572 (+) 855 WP_278101276.1 diaminopimelate epimerase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37039.39 Da        Isoelectric Point: 6.5200

>NTDB_id=811594 P8R59_RS12100 WP_278101271.1 2407836..2408888(+) (recA) [Microbacterium proteolyticum strain ustc]
MPSPAEREKALESALAQIDRQFGKGSVMRLGSDDRAPIETIPTGSVALDVALGIGGLPRGRIIEIYGPESSGKTTLTLHA
IANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLIRSGAIDLVVIDSVAALVPEAEIKGEM
GDSHVGLQARLMSQALRKLTGGLNTTKTTAIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVG
NRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEHGIVKKSGAWYTYDGEQLGQGKENARNFLIKNADVAAEI
ESKIKGKLGIGAPAATAAPAADELAARRPA

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=811594 P8R59_RS12100 WP_278101271.1 2407836..2408888(+) (recA) [Microbacterium proteolyticum strain ustc]
ATGCCCTCACCCGCAGAGCGCGAGAAGGCCCTCGAATCGGCCCTCGCCCAGATCGACCGGCAGTTCGGAAAGGGCTCGGT
CATGCGACTGGGCAGCGACGACCGTGCCCCGATCGAGACCATCCCCACCGGCTCCGTCGCCCTCGACGTGGCCCTCGGCA
TCGGCGGTCTTCCCCGCGGTCGCATCATCGAGATCTACGGCCCGGAGTCCTCGGGTAAGACCACGCTGACCCTCCACGCC
ATCGCCAACGCGCAGCGCGCGGGCGGTATCGCGGCGTTCATCGACGCCGAGCACGCGCTCGATCCCGAGTACGCGAAGAA
GCTCGGGGTCGACATCGACGCCCTCCTCGTCTCGCAGCCCGACACGGGTGAGCAGGCGCTCGAGATCGCCGACATGCTGA
TCCGTTCCGGCGCCATCGACCTCGTGGTCATCGACTCCGTGGCGGCGCTCGTCCCCGAAGCCGAGATCAAGGGTGAGATG
GGCGACTCGCACGTGGGTCTGCAGGCTCGCCTGATGTCGCAGGCCCTGCGAAAGCTCACCGGTGGGTTGAACACCACCAA
GACGACCGCGATCTTCATCAACCAGCTGCGCGAGAAGATCGGCGTGTTCTTCGGCTCGCCCGAGACCACCGCCGGAGGTA
AGGCGCTGAAGTTCTACGCGTCGGTCCGTCTCGACATCCGTCGAATCGAGACCCTCAAGGACGGTACCGAGGCGGTCGGT
AACCGCACTCGCGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCGT
GGGCATCTCGCGCGAGGGAAGCCTGATCGACTTCGGTGTCGAGCACGGCATCGTGAAGAAGTCGGGTGCCTGGTACACCT
ACGACGGCGAGCAGCTGGGGCAGGGCAAAGAGAACGCCCGCAACTTCCTGATCAAGAACGCCGACGTCGCGGCCGAGATC
GAGTCGAAGATCAAGGGCAAGCTCGGTATCGGCGCTCCGGCCGCGACCGCCGCTCCGGCCGCAGACGAGCTGGCCGCCCG
CCGTCCCGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.077

96.857

0.64
  recA Acinetobacter baylyi ADP1

65.964

94.857

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

66.871

93.143

0.623
  recA Neisseria gonorrhoeae strain FA1090

62.899

98.571

0.62
  recA Neisseria gonorrhoeae MS11

62.899

98.571

0.62
  recA Neisseria gonorrhoeae MS11

62.899

98.571

0.62
  recA Acinetobacter baumannii D1279779

67.391

92

0.62
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.149

92

0.609
  recA Vibrio cholerae strain A1552

66.149

92

0.609
  recA Ralstonia pseudosolanacearum GMI1000

68.051

89.429

0.609
  recA Streptococcus mitis SK321

61.449

98.571

0.606
  recA Lactococcus lactis subsp. cremoris KW2

63.939

94.286

0.603
  recA Streptococcus mitis NCTC 12261

60.87

98.571

0.6
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.308

92.857

0.597
  recA Helicobacter pylori 26695

63.333

94.286

0.597
  recA Helicobacter pylori strain NCTC11637

63.333

94.286

0.597
  recA Latilactobacillus sakei subsp. sakei 23K

64

92.857

0.594
  recA Glaesserella parasuis strain SC1401

61.062

96.857

0.591
  recA Streptococcus pneumoniae Rx1

62.727

94.286

0.591
  recA Streptococcus pneumoniae D39

62.727

94.286

0.591
  recA Streptococcus pneumoniae R6

62.727

94.286

0.591
  recA Streptococcus pneumoniae TIGR4

62.727

94.286

0.591
  recA Streptococcus pyogenes NZ131

62.31

94

0.586
  recA Streptococcus mutans UA159

61.702

94

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.702

94

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.75

91.429

0.537