Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   P8934_RS15575 Genome accession   NZ_CP121193
Coordinates   3300205..3301272 (-) Length   355 a.a.
NCBI ID   WP_133635705.1    Uniprot ID   -
Organism   Halomonas sp. CKK8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3295205..3306272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8934_RS15560 (P8934_15560) - 3295537..3296787 (-) 1251 WP_106230498.1 aspartate kinase -
  P8934_RS15565 (P8934_15565) alaS 3296893..3299502 (-) 2610 WP_278031844.1 alanine--tRNA ligase -
  P8934_RS15570 (P8934_15570) - 3299713..3300201 (-) 489 WP_278031845.1 regulatory protein RecX -
  P8934_RS15575 (P8934_15575) recA 3300205..3301272 (-) 1068 WP_133635705.1 recombinase RecA Machinery gene
  P8934_RS15580 (P8934_15580) - 3301450..3301962 (-) 513 WP_278031846.1 CinA family protein -
  P8934_RS15585 (P8934_15585) mutS 3302107..3304695 (+) 2589 WP_278031847.1 DNA mismatch repair protein MutS -
  P8934_RS15590 (P8934_15590) fdxA 3304859..3305182 (+) 324 WP_278031848.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37987.26 Da        Isoelectric Point: 4.8399

>NTDB_id=810900 P8934_RS15575 WP_133635705.1 3300205..3301272(-) (recA) [Halomonas sp. CKK8]
MAQDDNRSKALDAALSQIDRQFGKGTVMRLGDAPRVVMPSVSTGSLGLDIALGIGGLPLGRVVEIFGPESSGKTTLTLSV
IAQAQKQGKTCAFIDAEHALDPSYAEKLGVNLDDLLVSQPDTGEQALEICDMLVRSGGVDVIIIDSVAALTPRAEIEGEM
GDSHVGLQARLMSQALRKITGNIKNANCMVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSVKQGDEVTG
NETRVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVVDLGVQCKLIDKAGAWYSYQGNKIGQGKANAAQFLEDNPAVMEEI
ESQIRAQLLAPVEPRKEEAVDEAVTAEAGRDDDPS

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=810900 P8934_RS15575 WP_133635705.1 3300205..3301272(-) (recA) [Halomonas sp. CKK8]
ATGGCTCAGGATGACAACCGTTCCAAGGCGCTGGACGCCGCCCTTTCCCAGATCGACCGCCAGTTCGGCAAGGGCACCGT
GATGCGCCTGGGCGACGCCCCGCGCGTGGTGATGCCCTCGGTCTCCACCGGCTCGCTGGGCCTGGACATCGCCCTGGGGA
TCGGCGGCCTGCCATTGGGCCGGGTGGTCGAGATCTTCGGCCCCGAATCCTCGGGCAAGACCACCCTGACCCTGTCGGTG
ATCGCCCAGGCCCAGAAGCAGGGCAAGACCTGCGCCTTCATCGATGCCGAGCACGCCCTGGACCCGAGCTATGCCGAGAA
GCTCGGGGTCAATCTCGACGACCTGCTGGTCTCCCAGCCGGATACCGGCGAGCAGGCCCTCGAGATCTGCGACATGCTGG
TGCGCTCCGGCGGCGTCGACGTGATCATCATCGACTCGGTGGCGGCGCTGACCCCGCGGGCCGAGATCGAGGGCGAGATG
GGCGACTCCCACGTCGGCCTGCAGGCGCGCCTGATGTCCCAGGCCCTGCGCAAGATCACCGGCAACATCAAGAACGCCAA
CTGCATGGTGGTCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCCGAGACCACCACCGGCGGCA
ATGCGCTCAAGTTCTACTCCAGCGTGCGCCTGGACATCCGCCGCACCGGCTCGGTCAAGCAGGGTGACGAGGTCACCGGC
AACGAGACCCGGGTCAAGGTGGTCAAGAACAAGGTCGCCCCGCCGTTCCGCCAGGCGGAGTTCCAGATCCTCTACGGCAA
GGGGATCTACCATGCCGGGGAGGTGGTCGACCTGGGCGTGCAGTGCAAGCTGATCGACAAGGCGGGGGCCTGGTACAGCT
ACCAGGGCAACAAGATCGGCCAGGGCAAGGCCAACGCCGCCCAGTTCCTCGAGGACAACCCGGCGGTGATGGAGGAGATC
GAGAGCCAGATCCGCGCCCAGCTGCTCGCGCCGGTGGAGCCCAGGAAGGAGGAGGCCGTCGACGAGGCGGTCACCGCCGA
GGCCGGCCGCGACGACGACCCGTCATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

78.761

95.493

0.752
  recA Acinetobacter baylyi ADP1

76.687

91.831

0.704
  recA Acinetobacter baumannii D1279779

75.46

91.831

0.693
  recA Vibrio cholerae strain A1552

71.037

92.394

0.656
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.037

92.394

0.656
  recA Glaesserella parasuis strain SC1401

71.296

91.268

0.651
  recA Neisseria gonorrhoeae MS11

70.898

90.986

0.645
  recA Neisseria gonorrhoeae MS11

70.898

90.986

0.645
  recA Neisseria gonorrhoeae strain FA1090

70.898

90.986

0.645
  recA Ralstonia pseudosolanacearum GMI1000

71.704

87.606

0.628
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.202

94.648

0.589
  recA Helicobacter pylori 26695

60

97.183

0.583
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.19

91.831

0.58
  recA Helicobacter pylori strain NCTC11637

59.42

97.183

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

62.5

90.141

0.563
  recA Streptococcus mitis SK321

55.742

100

0.561
  recA Streptococcus mitis NCTC 12261

55.742

100

0.561
  recA Streptococcus mutans UA159

58.58

95.211

0.558
  recA Latilactobacillus sakei subsp. sakei 23K

60.429

91.831

0.555
  recA Streptococcus pneumoniae D39

54.294

100

0.552
  recA Streptococcus pneumoniae Rx1

54.294

100

0.552
  recA Streptococcus pneumoniae R6

54.294

100

0.552
  recA Streptococcus pneumoniae TIGR4

54.294

100

0.552
  recA Streptococcus pyogenes NZ131

58.537

92.394

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.798

92.113

0.532
  recA Lactococcus lactis subsp. cremoris KW2

56.481

91.268

0.515