Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   P8F79_RS08550 Genome accession   NZ_CP121172
Coordinates   1726338..1727393 (-) Length   351 a.a.
NCBI ID   WP_075577897.1    Uniprot ID   A0AAI8DID7
Organism   Mammaliicoccus sciuri strain PC04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1721338..1732393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8F79_RS08535 (P8F79_08530) - 1721670..1723106 (+) 1437 WP_048542639.1 glycosyltransferase family 2 protein -
  P8F79_RS08540 (P8F79_08535) - 1723150..1724385 (-) 1236 WP_048542635.1 Fic family protein -
  P8F79_RS08545 (P8F79_08540) rny 1724561..1726120 (-) 1560 WP_048542634.1 ribonuclease Y -
  P8F79_RS08550 (P8F79_08545) recA 1726338..1727393 (-) 1056 WP_075577897.1 recombinase RecA Machinery gene
  P8F79_RS08555 (P8F79_08550) - 1727562..1728710 (-) 1149 WP_048542630.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  P8F79_RS08560 (P8F79_08555) pgsA 1728768..1729349 (-) 582 WP_037587820.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  P8F79_RS08565 (P8F79_08560) - 1729414..1729809 (-) 396 WP_048542627.1 helix-turn-helix domain-containing protein -
  P8F79_RS08570 (P8F79_08565) - 1729830..1730645 (-) 816 WP_025905363.1 YmfK family protein -
  P8F79_RS08575 (P8F79_08570) - 1730662..1731366 (-) 705 WP_048542624.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38160.33 Da        Isoelectric Point: 5.2312

>NTDB_id=810845 P8F79_RS08550 WP_075577897.1 1726338..1727393(-) (recA) [Mammaliicoccus sciuri strain PC04]
MNERQKALDTVIKNMEKSFGKGAVMKLGDNTSREVSAVSSGSITLDKALGVGGYPKGRIIEIYGPESSGKTTVALHAIAE
AQRQGGVAAFIDAEHALDPVYAKNLGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVIVDSVAALTPKAEIEGEMGDT
HVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQEVVGNRT
KIKVVKNKVAPPFRVAEVDIMYGEGISREGELIDLAVEFDIVDKSGAWYSYNGERMGQGKENVKTYLKENPAIIEEIDGI
LRDQLGFNGKKKEEAKKEDKPNEPEQETLLD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=810845 P8F79_RS08550 WP_075577897.1 1726338..1727393(-) (recA) [Mammaliicoccus sciuri strain PC04]
GTGAACGAACGTCAAAAAGCACTCGATACAGTAATTAAGAATATGGAAAAATCCTTTGGTAAAGGGGCAGTAATGAAGCT
AGGGGATAATACAAGCAGAGAAGTATCAGCAGTTTCTAGTGGTTCAATCACACTTGATAAAGCATTAGGTGTTGGTGGTT
ACCCTAAAGGACGTATCATTGAAATATATGGTCCAGAAAGTTCTGGTAAAACAACAGTAGCTTTACACGCTATCGCTGAA
GCGCAAAGACAAGGTGGCGTAGCTGCTTTTATTGATGCTGAGCACGCACTAGATCCTGTTTATGCTAAAAACTTAGGCGT
AGATATTGATAACCTATATTTATCACAACCTGACCACGGTGAACAAGGTTTAGAGATTGCAGAAGCATTTGTTCGTAGTG
GTGCAGTTGATATTGTTATTGTCGACTCAGTAGCTGCATTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGATACA
CACGTTGGTTTACAAGCAAGATTAATGAGTCAAGCTTTACGTAAATTATCAGGTGCTATTTCTAAATCAAATACAACAGC
TATCTTTATCAACCAAATTCGTGAAAAAGTTGGCGTTATGTTCGGTAATCCTGAAGTAACACCAGGTGGACGTGCGTTGA
AGTTCTATAGTTCTGTTCGTTTAGAAGTACGTCGTGCTGAACAATTGAAACAAGGTCAAGAAGTAGTTGGTAACCGAACT
AAAATTAAAGTTGTTAAAAACAAAGTTGCGCCTCCATTCAGAGTAGCTGAAGTTGATATTATGTACGGTGAAGGTATTTC
ACGTGAAGGTGAATTAATCGACTTAGCAGTTGAATTTGATATTGTAGATAAATCAGGTGCTTGGTATTCATATAACGGAG
AACGTATGGGTCAAGGTAAAGAAAACGTTAAGACTTACTTAAAAGAAAATCCAGCTATTATTGAAGAAATTGATGGAATC
TTAAGAGATCAATTAGGCTTTAACGGTAAGAAGAAAGAAGAAGCTAAAAAAGAAGATAAACCTAATGAACCTGAACAAGA
AACTTTACTAGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.22

93.447

0.712
  recA Latilactobacillus sakei subsp. sakei 23K

68.286

99.715

0.681
  recA Streptococcus mitis NCTC 12261

64.345

100

0.658
  recA Streptococcus mutans UA159

65.242

100

0.652
  recA Streptococcus pneumoniae D39

64.571

99.715

0.644
  recA Streptococcus pneumoniae Rx1

64.571

99.715

0.644
  recA Streptococcus pneumoniae R6

64.571

99.715

0.644
  recA Streptococcus pneumoniae TIGR4

64.571

99.715

0.644
  recA Streptococcus pyogenes NZ131

68.085

93.732

0.638
  recA Streptococcus mitis SK321

65.205

97.436

0.635
  recA Acinetobacter baumannii D1279779

64.793

96.296

0.624
  recA Acinetobacter baylyi ADP1

63.081

98.006

0.618
  recA Neisseria gonorrhoeae MS11

62.428

98.575

0.615
  recA Neisseria gonorrhoeae strain FA1090

62.428

98.575

0.615
  recA Neisseria gonorrhoeae MS11

62.428

98.575

0.615
  recA Lactococcus lactis subsp. cremoris KW2

65.653

93.732

0.615
  recA Helicobacter pylori strain NCTC11637

62.139

98.575

0.613
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.046

93.732

0.61
  recA Helicobacter pylori 26695

61.85

98.575

0.61
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.217

91.738

0.598
  recA Vibrio cholerae strain A1552

65.217

91.738

0.598
  recA Glaesserella parasuis strain SC1401

59.42

98.291

0.584
  recA Pseudomonas stutzeri DSM 10701

62.883

92.877

0.584
  recA Ralstonia pseudosolanacearum GMI1000

64.65

89.459

0.578
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.909

94.017

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.392

90.028

0.553