Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | P8F80_RS07960 | Genome accession | NZ_CP121161 |
| Coordinates | 1595603..1596709 (-) | Length | 368 a.a. |
| NCBI ID | WP_135057520.1 | Uniprot ID | A0AAE6WKA5 |
| Organism | Ligilactobacillus murinus strain PC39 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1541436..1609576 | 1595603..1596709 | within | 0 |
Gene organization within MGE regions
Location: 1541436..1609576
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P8F80_RS07705 (P8F80_07705) | polA | 1541436..1544108 (-) | 2673 | WP_326516088.1 | DNA polymerase I | - |
| P8F80_RS07710 (P8F80_07710) | - | 1544203..1544904 (-) | 702 | WP_004048096.1 | Bax inhibitor-1/YccA family protein | - |
| P8F80_RS07715 (P8F80_07715) | - | 1544948..1545391 (-) | 444 | WP_004048097.1 | MaoC/PaaZ C-terminal domain-containing protein | - |
| P8F80_RS07720 (P8F80_07720) | - | 1545556..1546437 (+) | 882 | WP_326516089.1 | glycerophosphoryl diester phosphodiesterase membrane domain-containing protein | - |
| P8F80_RS07725 (P8F80_07725) | - | 1546530..1548097 (-) | 1568 | Protein_1475 | IS3 family transposase | - |
| P8F80_RS07730 (P8F80_07730) | - | 1548271..1549956 (+) | 1686 | WP_326516090.1 | IS1182 family transposase | - |
| P8F80_RS07735 (P8F80_07735) | - | 1549919..1550743 (+) | 825 | WP_326516091.1 | glycerophosphodiester phosphodiesterase | - |
| P8F80_RS07740 (P8F80_07740) | murC | 1550827..1552158 (-) | 1332 | WP_004048099.1 | UDP-N-acetylmuramate--L-alanine ligase | - |
| P8F80_RS07745 (P8F80_07745) | - | 1552279..1553445 (-) | 1167 | WP_326516092.1 | ATP-grasp domain-containing protein | - |
| P8F80_RS07750 (P8F80_07750) | - | 1553465..1554211 (-) | 747 | WP_004048102.1 | esterase family protein | - |
| P8F80_RS07755 (P8F80_07755) | - | 1554484..1555308 (+) | 825 | WP_004048104.1 | alpha/beta hydrolase | - |
| P8F80_RS07760 (P8F80_07760) | - | 1555386..1557548 (-) | 2163 | WP_326516093.1 | DNA translocase FtsK | - |
| P8F80_RS07765 (P8F80_07765) | ytpR | 1557697..1558338 (-) | 642 | WP_326516094.1 | YtpR family tRNA-binding protein | - |
| P8F80_RS07770 (P8F80_07770) | - | 1558359..1558676 (-) | 318 | WP_004048111.1 | thioredoxin family protein | - |
| P8F80_RS07775 (P8F80_07775) | trmB | 1558753..1559397 (-) | 645 | WP_326516095.1 | tRNA (guanosine(46)-N7)-methyltransferase TrmB | - |
| P8F80_RS07780 (P8F80_07780) | - | 1559495..1560289 (-) | 795 | WP_326516096.1 | phosphotransferase family protein | - |
| P8F80_RS07785 (P8F80_07785) | - | 1560353..1561567 (-) | 1215 | WP_004048118.1 | ABC transporter permease | - |
| P8F80_RS07790 (P8F80_07790) | - | 1561560..1562300 (-) | 741 | WP_004048119.1 | ABC transporter ATP-binding protein | - |
| P8F80_RS12420 | - | 1562318..1562446 (-) | 129 | WP_371824645.1 | hypothetical protein | - |
| P8F80_RS12425 | - | 1562443..1562709 (-) | 267 | WP_039936027.1 | maltose acetyltransferase domain-containing protein | - |
| P8F80_RS07800 (P8F80_07800) | - | 1562849..1563277 (+) | 429 | WP_004048123.1 | HIT family protein | - |
| P8F80_RS07805 (P8F80_07805) | - | 1563283..1563588 (+) | 306 | WP_004048124.1 | hypothetical protein | - |
| P8F80_RS07810 (P8F80_07810) | - | 1563679..1564575 (+) | 897 | WP_004048125.1 | peptidylprolyl isomerase PrsA | - |
| P8F80_RS07815 (P8F80_07815) | - | 1564663..1565262 (-) | 600 | WP_221677516.1 | viroplasmin family protein | - |
| P8F80_RS07820 (P8F80_07820) | - | 1565269..1565670 (-) | 402 | WP_039936028.1 | MerR family transcriptional regulator | - |
| P8F80_RS07825 (P8F80_07825) | - | 1565804..1566751 (-) | 948 | WP_004048128.1 | 3'-5' exoribonuclease YhaM family protein | - |
| P8F80_RS07830 (P8F80_07830) | - | 1566864..1567202 (-) | 339 | WP_056958799.1 | YlbF family regulator | - |
| P8F80_RS07835 (P8F80_07835) | - | 1567280..1569394 (-) | 2115 | WP_326516097.1 | PBP1A family penicillin-binding protein | - |
| P8F80_RS07840 (P8F80_07840) | - | 1569537..1570004 (-) | 468 | WP_004048131.1 | arginine repressor | - |
| P8F80_RS07845 (P8F80_07845) | - | 1570074..1570820 (-) | 747 | WP_326516098.1 | Crp/Fnr family transcriptional regulator | - |
| P8F80_RS07850 (P8F80_07850) | - | 1571472..1571645 (-) | 174 | WP_155820272.1 | hypothetical protein | - |
| P8F80_RS07855 (P8F80_07855) | - | 1571902..1572864 (+) | 963 | WP_326516099.1 | IS30 family transposase | - |
| P8F80_RS07860 (P8F80_07860) | - | 1572881..1573746 (+) | 866 | Protein_1503 | IS30 family transposase | - |
| P8F80_RS07865 (P8F80_07865) | argS | 1573998..1575695 (-) | 1698 | WP_056959976.1 | arginine--tRNA ligase | - |
| P8F80_RS07875 (P8F80_07875) | - | 1576099..1576308 (-) | 210 | WP_004048157.1 | hypothetical protein | - |
| P8F80_RS07880 (P8F80_07880) | - | 1576437..1577324 (-) | 888 | WP_056959978.1 | LysR family transcriptional regulator | - |
| P8F80_RS07885 (P8F80_07885) | purD | 1577500..1578795 (-) | 1296 | WP_153550875.1 | phosphoribosylamine--glycine ligase | - |
| P8F80_RS07890 (P8F80_07890) | purH | 1578816..1580354 (-) | 1539 | WP_326516101.1 | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase | - |
| P8F80_RS07895 (P8F80_07895) | purN | 1580357..1580935 (-) | 579 | WP_004048161.1 | phosphoribosylglycinamide formyltransferase | - |
| P8F80_RS07900 (P8F80_07900) | purM | 1580947..1581987 (-) | 1041 | WP_004048162.1 | phosphoribosylformylglycinamidine cyclo-ligase | - |
| P8F80_RS07905 (P8F80_07905) | purF | 1581984..1583438 (-) | 1455 | WP_326516102.1 | amidophosphoribosyltransferase | - |
| P8F80_RS07910 (P8F80_07910) | purL | 1583414..1585639 (-) | 2226 | WP_326516103.1 | phosphoribosylformylglycinamidine synthase subunit PurL | - |
| P8F80_RS07915 (P8F80_07915) | purQ | 1585639..1586322 (-) | 684 | WP_004048166.1 | phosphoribosylformylglycinamidine synthase subunit PurQ | - |
| P8F80_RS07920 (P8F80_07920) | purS | 1586322..1586570 (-) | 249 | WP_004048169.1 | phosphoribosylformylglycinamidine synthase subunit PurS | - |
| P8F80_RS07925 (P8F80_07925) | purC | 1586570..1587289 (-) | 720 | WP_004048170.1 | phosphoribosylaminoimidazolesuccinocarboxamide synthase | - |
| P8F80_RS07930 (P8F80_07930) | purB | 1587640..1588935 (-) | 1296 | WP_135942202.1 | adenylosuccinate lyase | - |
| P8F80_RS07935 (P8F80_07935) | purK | 1588959..1590086 (-) | 1128 | WP_420029527.1 | 5-(carboxyamino)imidazole ribonucleotide synthase | - |
| P8F80_RS07940 (P8F80_07940) | purE | 1590079..1590543 (-) | 465 | WP_039936033.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| P8F80_RS07945 (P8F80_07945) | - | 1590884..1592908 (-) | 2025 | WP_004048175.1 | KUP/HAK/KT family potassium transporter | - |
| P8F80_RS07950 (P8F80_07950) | - | 1593086..1593814 (+) | 729 | WP_004048177.1 | deoxynucleoside kinase | - |
| P8F80_RS07955 (P8F80_07955) | rny | 1593874..1595424 (-) | 1551 | WP_004048183.1 | ribonuclease Y | - |
| P8F80_RS07960 (P8F80_07960) | recA | 1595603..1596709 (-) | 1107 | WP_135057520.1 | recombinase RecA | Machinery gene |
| P8F80_RS07965 (P8F80_07965) | pgsA | 1596927..1597514 (-) | 588 | WP_004048187.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| P8F80_RS07970 (P8F80_07970) | - | 1597622..1598551 (-) | 930 | WP_163587502.1 | helix-turn-helix domain-containing protein | - |
| P8F80_RS07975 (P8F80_07975) | ymfI | 1598591..1599319 (-) | 729 | WP_004048191.1 | elongation factor P 5-aminopentanone reductase | - |
| P8F80_RS07980 (P8F80_07980) | yfmH | 1599316..1600623 (-) | 1308 | WP_163587503.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| P8F80_RS07985 (P8F80_07985) | yfmF | 1600623..1601885 (-) | 1263 | WP_163587504.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| P8F80_RS07990 (P8F80_07990) | - | 1602073..1604316 (-) | 2244 | WP_004048197.1 | FtsK/SpoIIIE family DNA translocase | - |
| P8F80_RS07995 (P8F80_07995) | - | 1604618..1606255 (+) | 1638 | WP_004048199.1 | peptide ABC transporter substrate-binding protein | - |
| P8F80_RS08000 (P8F80_08000) | - | 1606297..1606809 (-) | 513 | WP_004048206.1 | tRNA (cytidine(34)-2'-O)-methyltransferase | - |
| P8F80_RS08005 (P8F80_08005) | - | 1607002..1607859 (-) | 858 | WP_089135408.1 | methyltransferase domain-containing protein | - |
| P8F80_RS08010 (P8F80_08010) | - | 1607868..1608377 (-) | 510 | WP_089135409.1 | aminoacyl-tRNA deacylase | - |
| P8F80_RS08015 (P8F80_08015) | - | 1608599..1609576 (+) | 978 | WP_004048209.1 | GMP reductase | - |
Sequence
Protein
Download Length: 368 a.a. Molecular weight: 39474.18 Da Isoelectric Point: 6.7625
>NTDB_id=810720 P8F80_RS07960 WP_135057520.1 1595603..1596709(-) (recA) [Ligilactobacillus murinus strain PC39]
MADERQVALDKALKKIEKDFGKGAIMKMGEKADTQISTVPSGSLALDEALGVGGFPRGRIVEIYGPESSGKTTVALQAVA
EVQKQGGLAAYIDAENALDPAYATALGVNIDDLLLSQPGTGEEGLQIADALVSSGAVDIVVIDSVAALVPKAEIEGEMGD
SHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKDGSDVLGNR
TRIKVVKNKVAPPFRTAEVDIMYGEGISKMGELIDLAVEKDIIEKSGSWFSYGGSHIGQGREKTKAYLSEHPEVADEITQ
KVRDTPTLTQKEKKALEKEKKAKEKEAAKADKKAANKPVSLDLGKDEK
MADERQVALDKALKKIEKDFGKGAIMKMGEKADTQISTVPSGSLALDEALGVGGFPRGRIVEIYGPESSGKTTVALQAVA
EVQKQGGLAAYIDAENALDPAYATALGVNIDDLLLSQPGTGEEGLQIADALVSSGAVDIVVIDSVAALVPKAEIEGEMGD
SHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKDGSDVLGNR
TRIKVVKNKVAPPFRTAEVDIMYGEGISKMGELIDLAVEKDIIEKSGSWFSYGGSHIGQGREKTKAYLSEHPEVADEITQ
KVRDTPTLTQKEKKALEKEKKAKEKEAAKADKKAANKPVSLDLGKDEK
Nucleotide
Download Length: 1107 bp
>NTDB_id=810720 P8F80_RS07960 WP_135057520.1 1595603..1596709(-) (recA) [Ligilactobacillus murinus strain PC39]
TTGGCTGACGAAAGACAAGTTGCTTTAGACAAAGCGCTCAAGAAGATCGAAAAAGATTTCGGTAAAGGTGCCATCATGAA
GATGGGTGAAAAGGCTGATACCCAGATCTCAACTGTTCCAAGTGGTTCATTGGCCCTTGATGAAGCTTTGGGAGTAGGTG
GTTTCCCAAGGGGACGTATCGTGGAGATCTATGGGCCTGAAAGTTCTGGTAAGACCACCGTTGCCTTGCAAGCGGTAGCT
GAAGTTCAAAAACAAGGCGGTCTAGCAGCCTATATCGATGCGGAAAATGCACTTGATCCTGCATATGCGACAGCTTTGGG
CGTAAATATCGACGACTTGTTGCTCTCTCAACCCGGTACTGGTGAAGAAGGTCTACAGATCGCAGATGCCTTGGTCTCTT
CTGGTGCGGTAGATATCGTGGTCATTGACTCCGTAGCGGCTTTAGTTCCTAAAGCTGAGATCGAAGGTGAGATGGGCGAC
TCACATGTTGGTTTACAAGCGCGTTTGATGTCTCAAGCTTTGCGTAAACTTTCAGGTACGATCAACAAGACTAAGACGAT
CGCTTTGTTTATCAATCAGATCCGTGAAAAAGTTGGGGTGATGTTTGGTAATCCGGAAACGACCCCTGGTGGACGGGCCC
TTAAGTTTTACTCAACGATCCGCTTGGAAGTTCGGCGTGCTGAACAGATCAAGGATGGTTCCGATGTCTTAGGTAACCGG
ACTCGGATCAAAGTTGTGAAAAACAAGGTTGCACCACCATTTAGAACGGCAGAAGTTGATATCATGTATGGCGAAGGGAT
CTCGAAGATGGGTGAATTGATCGACTTAGCAGTTGAAAAAGATATCATCGAAAAGAGTGGTTCATGGTTCTCATATGGTG
GTAGTCATATTGGTCAAGGTCGTGAAAAGACAAAGGCTTACTTGAGTGAACATCCTGAAGTGGCCGACGAGATCACCCAA
AAAGTTCGTGATACACCAACGCTCACACAAAAAGAGAAAAAAGCACTTGAAAAAGAAAAAAAAGCTAAGGAAAAAGAAGC
GGCTAAAGCTGATAAAAAGGCAGCTAATAAGCCGGTCAGTTTAGACTTAGGCAAAGATGAAAAATAA
TTGGCTGACGAAAGACAAGTTGCTTTAGACAAAGCGCTCAAGAAGATCGAAAAAGATTTCGGTAAAGGTGCCATCATGAA
GATGGGTGAAAAGGCTGATACCCAGATCTCAACTGTTCCAAGTGGTTCATTGGCCCTTGATGAAGCTTTGGGAGTAGGTG
GTTTCCCAAGGGGACGTATCGTGGAGATCTATGGGCCTGAAAGTTCTGGTAAGACCACCGTTGCCTTGCAAGCGGTAGCT
GAAGTTCAAAAACAAGGCGGTCTAGCAGCCTATATCGATGCGGAAAATGCACTTGATCCTGCATATGCGACAGCTTTGGG
CGTAAATATCGACGACTTGTTGCTCTCTCAACCCGGTACTGGTGAAGAAGGTCTACAGATCGCAGATGCCTTGGTCTCTT
CTGGTGCGGTAGATATCGTGGTCATTGACTCCGTAGCGGCTTTAGTTCCTAAAGCTGAGATCGAAGGTGAGATGGGCGAC
TCACATGTTGGTTTACAAGCGCGTTTGATGTCTCAAGCTTTGCGTAAACTTTCAGGTACGATCAACAAGACTAAGACGAT
CGCTTTGTTTATCAATCAGATCCGTGAAAAAGTTGGGGTGATGTTTGGTAATCCGGAAACGACCCCTGGTGGACGGGCCC
TTAAGTTTTACTCAACGATCCGCTTGGAAGTTCGGCGTGCTGAACAGATCAAGGATGGTTCCGATGTCTTAGGTAACCGG
ACTCGGATCAAAGTTGTGAAAAACAAGGTTGCACCACCATTTAGAACGGCAGAAGTTGATATCATGTATGGCGAAGGGAT
CTCGAAGATGGGTGAATTGATCGACTTAGCAGTTGAAAAAGATATCATCGAAAAGAGTGGTTCATGGTTCTCATATGGTG
GTAGTCATATTGGTCAAGGTCGTGAAAAGACAAAGGCTTACTTGAGTGAACATCCTGAAGTGGCCGACGAGATCACCCAA
AAAGTTCGTGATACACCAACGCTCACACAAAAAGAGAAAAAAGCACTTGAAAAAGAAAAAAAAGCTAAGGAAAAAGAAGC
GGCTAAAGCTGATAAAAAGGCAGCTAATAAGCCGGTCAGTTTAGACTTAGGCAAAGATGAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.