Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   P6287_RS15110 Genome accession   NZ_CP121108
Coordinates   3227986..3229056 (-) Length   356 a.a.
NCBI ID   WP_137386329.1    Uniprot ID   -
Organism   Pantoea sp. X85     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3222986..3234056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6287_RS15095 (P6287_15095) csrA 3224157..3224342 (-) 186 WP_008104508.1 carbon storage regulator CsrA -
  P6287_RS15100 (P6287_15100) alaS 3224592..3227219 (-) 2628 WP_192411987.1 alanine--tRNA ligase -
  P6287_RS15105 (P6287_15105) - 3227355..3227870 (-) 516 WP_192411988.1 regulatory protein RecX -
  P6287_RS15110 (P6287_15110) recA 3227986..3229056 (-) 1071 WP_137386329.1 recombinase RecA Machinery gene
  P6287_RS15115 (P6287_15115) pncC 3229150..3229644 (-) 495 WP_192411989.1 nicotinamide-nucleotide amidase -
  P6287_RS15120 (P6287_15120) tam 3229747..3230523 (-) 777 WP_192411990.1 trans-aconitate 2-methyltransferase -
  P6287_RS15125 (P6287_15125) - 3230690..3231577 (+) 888 WP_277974001.1 dihydrodipicolinate synthase family protein -
  P6287_RS15130 (P6287_15130) - 3231610..3231945 (-) 336 WP_277974002.1 zinc ribbon domain-containing protein YjdM -
  P6287_RS15135 (P6287_15135) mltB 3232031..3233113 (-) 1083 WP_277974003.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38070.47 Da        Isoelectric Point: 4.9666

>NTDB_id=810162 P6287_RS15110 WP_137386329.1 3227986..3229056(-) (recA) [Pantoea sp. X85]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IASAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVG
SETRVKVVKNKVAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLVEKAGAWYSYNGEKIGQGKANSTNFLKENPAIANEI
DKKLRDLLLSGDAAAADTAKISADDREEASETNEDF

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=810162 P6287_RS15110 WP_137386329.1 3227986..3229056(-) (recA) [Pantoea sp. X85]
ATGGCGATCGACGAGAACAAACAGAAGGCTTTAGCTGCCGCACTGGGCCAGATTGAGAAGCAATTTGGTAAAGGCTCCAT
CATGCGCTTGGGTGAAGACCGCTCAATGGATGTCGAAACCATCTCTACCGGCTCACTGTCACTGGATATCGCGCTGGGCG
CGGGTGGCTTGCCGATGGGCCGTATCGTTGAGATTTACGGACCGGAATCTTCGGGTAAAACCACGCTGACGCTGCAGGTC
ATTGCTTCTGCACAGCGTAAAGGTAAAACCTGTGCCTTTATCGATGCTGAGCACGCACTGGATCCGGTGTACGCGAAAAA
ACTGGGCGTTGATATCGATAACCTGCTGTGTTCACAGCCGGATACCGGTGAGCAAGCGCTGGAGATTTGTGATGCGCTGG
CGCGTTCAGGCGCAGTTGACGTCATCATCGTCGACTCCGTGGCGGCGCTGACGCCGAAAGCGGAAATCGAAGGCGAGATT
GGCGATTCGCACATGGGTCTGGCCGCTCGTATGATGAGCCAGGCAATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATTCGTATGAAGATTGGTGTGATGTTCGGTAACCCGGAAACCACAACAGGCGGTA
ACGCACTGAAATTCTACGCTTCTGTTCGTCTGGATATCCGCCGTATCGGTGCGATTAAAGAGGGCGACGAAGTGGTAGGT
AGCGAAACCCGCGTGAAAGTCGTGAAGAACAAAGTTGCGGCACCGTTTAAGCAGGCTGAATTCCAAATCATGTACGGCGA
AGGTATCAACACCTTTGGCGAGCTGGTGGATCTTGGCGTGAAGCACAAACTGGTTGAGAAAGCCGGCGCGTGGTACAGCT
ACAACGGTGAGAAGATTGGTCAGGGTAAAGCTAACTCCACCAACTTCCTTAAAGAGAACCCGGCGATTGCGAATGAAATC
GACAAGAAGCTGCGTGACTTACTGCTAAGTGGTGATGCCGCCGCCGCAGACACCGCGAAAATCTCCGCGGATGATCGCGA
AGAAGCCAGCGAAACCAACGAAGATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

81.073

99.438

0.806
  recA Vibrio cholerae O1 biovar El Tor strain E7946

81.073

99.438

0.806
  recA Pseudomonas stutzeri DSM 10701

73.256

96.629

0.708
  recA Acinetobacter baumannii D1279779

71.098

97.191

0.691
  recA Acinetobacter baylyi ADP1

73.476

92.135

0.677
  recA Glaesserella parasuis strain SC1401

67.806

98.596

0.669
  recA Neisseria gonorrhoeae MS11

69.325

91.573

0.635
  recA Neisseria gonorrhoeae MS11

69.325

91.573

0.635
  recA Neisseria gonorrhoeae strain FA1090

69.325

91.573

0.635
  recA Ralstonia pseudosolanacearum GMI1000

71.383

87.36

0.624
  recA Streptococcus pneumoniae TIGR4

59.155

99.719

0.59
  recA Streptococcus pneumoniae Rx1

59.155

99.719

0.59
  recA Streptococcus pneumoniae D39

59.155

99.719

0.59
  recA Streptococcus pneumoniae R6

59.155

99.719

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.692

91.292

0.581
  recA Helicobacter pylori strain NCTC11637

62.997

91.854

0.579
  recA Helicobacter pylori 26695

62.691

91.854

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

63.551

90.169

0.573
  recA Streptococcus mutans UA159

62.462

91.292

0.57
  recA Streptococcus mitis NCTC 12261

62.848

90.73

0.57
  recA Streptococcus mitis SK321

62.539

90.73

0.567
  recA Streptococcus pyogenes NZ131

62.154

91.292

0.567
  recA Lactococcus lactis subsp. cremoris KW2

61.92

90.73

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

91.292

0.559
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

93.258

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.327

91.854

0.545