Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   P8T86_RS07055 Genome accession   NZ_CP121102
Coordinates   1345258..1346301 (-) Length   347 a.a.
NCBI ID   WP_036654057.1    Uniprot ID   A0AAP5JYJ6
Organism   Paenibacillus larvae strain PL006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1340258..1351301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8T86_RS07035 (P8T86_06990) - 1341191..1341451 (-) 261 WP_005550495.1 stage V sporulation protein S -
  P8T86_RS07040 (P8T86_06995) - 1341564..1342358 (-) 795 WP_036654061.1 TIGR00282 family metallophosphoesterase -
  P8T86_RS07045 (P8T86_07000) rny 1342466..1344007 (-) 1542 WP_036654059.1 ribonuclease Y -
  P8T86_RS07050 (P8T86_07005) - 1344503..1345159 (-) 657 WP_023484653.1 RecX family transcriptional regulator -
  P8T86_RS07055 (P8T86_07010) recA 1345258..1346301 (-) 1044 WP_036654057.1 recombinase RecA Machinery gene
  P8T86_RS07060 (P8T86_07015) - 1346491..1347747 (-) 1257 WP_311795341.1 competence/damage-inducible protein A -
  P8T86_RS07065 (P8T86_07020) pgsA 1347877..1348455 (-) 579 WP_024094239.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  P8T86_RS07070 (P8T86_07025) rimO 1348452..1349780 (-) 1329 WP_023484657.1 30S ribosomal protein S12 methylthiotransferase RimO -
  P8T86_RS07075 (P8T86_07030) - 1349923..1350413 (-) 491 Protein_1415 YajQ family cyclic di-GMP-binding protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37653.75 Da        Isoelectric Point: 4.9717

>NTDB_id=810132 P8T86_RS07055 WP_036654057.1 1345258..1346301(-) (recA) [Paenibacillus larvae strain PL006]
MSDRRAALENALRQIEKQFGKGSIMKLGESTHNQVETIPSGSLALDIALGVGGFPRGRIIEIYGPESSGKTTVALHAIAE
VQKTGGQAAFIDAEHALDPVYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIIIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKVIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDIRRVESIKQGNDIIGNRT
RIKVVKNKVAPPFKQADVDIMYGEGISKEGSLVDIASEMDIINKSGAWYSYNNDRLGQGRENAKQFLKENPQISQEIEQK
IREASNLTTTVPAVTEEENEDLELSFE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=810132 P8T86_RS07055 WP_036654057.1 1345258..1346301(-) (recA) [Paenibacillus larvae strain PL006]
TTGTCAGATCGTCGTGCCGCGTTAGAGAACGCTTTGCGCCAAATTGAAAAGCAATTCGGAAAAGGTTCCATTATGAAATT
GGGAGAATCTACCCATAATCAAGTTGAGACGATCCCCAGCGGTTCGCTGGCTTTGGACATTGCTCTTGGAGTTGGAGGAT
TCCCAAGAGGAAGAATTATTGAGATCTACGGGCCCGAATCATCCGGTAAGACGACTGTTGCCCTTCATGCGATTGCAGAA
GTACAAAAAACGGGCGGACAAGCCGCATTTATTGATGCAGAACACGCTCTAGACCCTGTTTATGCTAGTAAACTCGGTGT
TAATATAGATGAACTTCTTTTATCCCAGCCGGATACAGGAGAACAAGCCCTTGAGATTGCGGAAGCCCTGGTGCGAAGCG
GTGCGGTTGATATCATAATCATCGACTCGGTAGCTGCACTGGTACCTAAAGCTGAAATTGAGGGCGACATGGGGGATTCC
CATGTAGGGCTGCAGGCCCGATTAATGTCACAGGCGCTGCGCAAGTTGTCTGGTGCGATTAATAAATCCAAGGTAATTGC
TATCTTTATTAATCAGCTTCGTGAAAAAGTCGGTGTTATGTTTGGTAATCCGGAAACTACACCGGGAGGAAGAGCGCTTA
AGTTTTACTCATCGGTACGCTTGGATATCCGACGTGTGGAGAGCATTAAGCAAGGCAATGATATTATTGGTAACCGCACC
CGCATTAAAGTTGTAAAGAATAAAGTTGCCCCGCCTTTCAAGCAAGCGGATGTGGATATTATGTATGGTGAAGGTATCTC
CAAGGAAGGAAGTCTTGTAGACATTGCTTCCGAGATGGATATCATTAATAAAAGTGGAGCCTGGTATTCATACAATAATG
ACCGGCTTGGCCAGGGCAGAGAGAACGCAAAGCAATTTCTGAAAGAAAATCCGCAAATCTCTCAAGAGATCGAACAAAAA
ATCCGCGAGGCAAGCAATCTAACAACGACCGTTCCCGCCGTGACAGAAGAAGAGAATGAAGATTTGGAGCTTAGTTTTGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.651

94.236

0.769
  recA Latilactobacillus sakei subsp. sakei 23K

73.62

93.948

0.692
  recA Streptococcus pyogenes NZ131

66.667

100

0.68
  recA Streptococcus pneumoniae Rx1

69.697

95.101

0.663
  recA Streptococcus pneumoniae D39

69.697

95.101

0.663
  recA Streptococcus pneumoniae R6

69.697

95.101

0.663
  recA Streptococcus pneumoniae TIGR4

69.697

95.101

0.663
  recA Streptococcus mitis NCTC 12261

70.462

93.66

0.66
  recA Streptococcus mitis SK321

70.154

93.66

0.657
  recA Streptococcus mutans UA159

70.37

93.372

0.657
  recA Lactococcus lactis subsp. cremoris KW2

68.182

95.101

0.648
  recA Acinetobacter baylyi ADP1

63.037

100

0.634
  recA Neisseria gonorrhoeae strain FA1090

66.463

94.524

0.628
  recA Neisseria gonorrhoeae MS11

66.463

94.524

0.628
  recA Neisseria gonorrhoeae MS11

66.463

94.524

0.628
  recA Glaesserella parasuis strain SC1401

63.824

97.983

0.625
  recA Acinetobacter baumannii D1279779

62.609

99.424

0.622
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.244

94.524

0.617
  recA Vibrio cholerae strain A1552

66.355

92.507

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.355

92.507

0.614
  recA Ralstonia pseudosolanacearum GMI1000

64.526

94.236

0.608
  recA Pseudomonas stutzeri DSM 10701

61.471

97.983

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.882

97.983

0.597
  recA Helicobacter pylori 26695

59.357

98.559

0.585
  recA Helicobacter pylori strain NCTC11637

59.064

98.559

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.92

93.084

0.576