Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   P6M73_RS09320 Genome accession   NZ_CP120965
Coordinates   1993514..1994605 (-) Length   363 a.a.
NCBI ID   WP_277852784.1    Uniprot ID   -
Organism   Proteiniclasticum sp. QWL-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1988514..1999605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6M73_RS09310 (P6M73_09310) - 1989796..1991031 (-) 1236 WP_277852782.1 glycosyltransferase -
  P6M73_RS09315 (P6M73_09315) rny 1991732..1993318 (-) 1587 WP_277852783.1 ribonuclease Y -
  P6M73_RS09320 (P6M73_09320) recA 1993514..1994605 (-) 1092 WP_277852784.1 recombinase RecA Machinery gene
  P6M73_RS09325 (P6M73_09325) - 1994731..1995807 (-) 1077 WP_277852785.1 tetratricopeptide repeat protein -
  P6M73_RS09330 (P6M73_09330) - 1996152..1997879 (-) 1728 WP_277852786.1 phospho-sugar mutase -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 39291.14 Da        Isoelectric Point: 6.1801

>NTDB_id=809659 P6M73_RS09320 WP_277852784.1 1993514..1994605(-) (recA) [Proteiniclasticum sp. QWL-01]
MPVNADKLKAIEAAMGQIEKQFGKGSIMKLGDDAKMNVESIPTGCLDLDIALGIGGIPRGRIVEVYGPESSGKTTVALHM
VAEAQKLGGIAAFIDVEHALDPQYAKVIGVDIDDLIVSQPDTGEQALEITEALVRSNAVDIVVVDSVAALVPRAEIEGEM
GDSHVGLQARLMSQALRKLTASISKSRCCVVFINQLREKVGIMFGNPEVTPGGRALKFYASVRLDVRRTDTIKTGDEFMG
SRTRIKVTKNKVAPPFRQAEFDIMYNGGISREGNIIDVGVKEDIVGKSGAWFYYGETRLGQGRENAKNYLRENPELALVL
ENKIREKHNLPLLKGSDLPGETSGSEMSPEEKPAKADKAKTVK

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=809659 P6M73_RS09320 WP_277852784.1 1993514..1994605(-) (recA) [Proteiniclasticum sp. QWL-01]
ATGCCAGTAAACGCAGATAAGCTGAAAGCAATTGAAGCGGCCATGGGCCAAATAGAAAAACAATTCGGAAAGGGTTCCAT
CATGAAGCTGGGGGATGACGCGAAGATGAACGTCGAATCCATCCCCACCGGATGCCTTGACCTCGACATTGCGCTGGGAA
TCGGCGGCATTCCCAGAGGCCGGATCGTTGAAGTCTATGGTCCGGAATCCTCCGGAAAAACCACGGTTGCTCTGCACATG
GTGGCAGAAGCCCAGAAACTTGGAGGCATTGCTGCCTTCATTGATGTGGAGCATGCCCTGGATCCTCAGTACGCCAAAGT
AATCGGCGTTGATATCGACGACCTGATCGTATCTCAGCCGGATACCGGTGAACAAGCCCTGGAAATCACAGAAGCCCTGG
TACGTTCCAACGCCGTGGACATTGTGGTAGTAGACTCCGTCGCTGCCCTGGTACCGCGGGCGGAAATTGAAGGAGAAATG
GGTGATTCCCACGTCGGCCTGCAGGCCAGACTCATGTCCCAGGCCCTGCGCAAACTGACGGCATCCATCAGCAAGAGCCG
CTGCTGCGTGGTGTTTATCAACCAGCTGCGAGAGAAGGTCGGCATTATGTTTGGAAATCCGGAAGTAACGCCGGGTGGCC
GGGCACTTAAATTCTACGCATCCGTTCGTCTGGACGTGCGTCGTACTGATACGATTAAAACCGGAGATGAGTTCATGGGC
AGCCGGACCCGGATCAAAGTGACCAAAAACAAGGTTGCCCCTCCATTCCGGCAGGCAGAGTTCGACATCATGTACAATGG
CGGGATCTCCAGAGAAGGCAATATCATCGATGTCGGTGTCAAAGAAGATATTGTTGGTAAATCCGGCGCCTGGTTCTATT
ATGGAGAAACCAGACTGGGGCAGGGTCGTGAGAATGCGAAAAATTACCTCAGAGAGAATCCTGAGCTGGCGCTGGTTTTG
GAAAACAAGATCCGGGAAAAGCATAATCTGCCCTTGTTGAAGGGAAGTGATTTGCCTGGAGAAACTTCCGGCTCGGAGAT
GAGTCCTGAAGAAAAGCCGGCAAAAGCTGACAAAGCGAAGACTGTGAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

68.712

89.807

0.617
  recA Neisseria gonorrhoeae MS11

61.671

95.592

0.59
  recA Neisseria gonorrhoeae MS11

61.671

95.592

0.59
  recA Neisseria gonorrhoeae strain FA1090

61.671

95.592

0.59
  recA Streptococcus pneumoniae Rx1

59.167

99.174

0.587
  recA Streptococcus pneumoniae TIGR4

59.167

99.174

0.587
  recA Streptococcus pneumoniae R6

59.167

99.174

0.587
  recA Streptococcus pneumoniae D39

59.167

99.174

0.587
  recA Glaesserella parasuis strain SC1401

60.857

96.419

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

63.772

92.011

0.587
  recA Pseudomonas stutzeri DSM 10701

65.231

89.532

0.584
  recA Vibrio cholerae strain A1552

64.815

89.256

0.579
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.815

89.256

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.333

90.909

0.576
  recA Ralstonia pseudosolanacearum GMI1000

66.667

85.124

0.567
  recA Acinetobacter baylyi ADP1

59.71

95.041

0.567
  recA Streptococcus pyogenes NZ131

63.19

89.807

0.567
  recA Streptococcus mitis NCTC 12261

62.424

90.909

0.567
  recA Streptococcus mitis SK321

62.424

90.909

0.567
  recA Streptococcus mutans UA159

61.702

90.634

0.559
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.924

87.052

0.556
  recA Helicobacter pylori 26695

61.468

90.083

0.554
  recA Lactococcus lactis subsp. cremoris KW2

60.606

90.909

0.551
  recA Helicobacter pylori strain NCTC11637

61.162

90.083

0.551
  recA Acinetobacter baumannii D1279779

60.923

89.532

0.545
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.146

90.358

0.534