Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   P2A85_RS24850 Genome accession   NZ_CP120853
Coordinates   5723629..5724741 (-) Length   370 a.a.
NCBI ID   WP_340517957.1    Uniprot ID   -
Organism   MAG: Microcoleus anatoxicus isolate Neu2020_A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5718629..5729741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2A85_RS24825 (P2A85_24800) nblB 5719224..5719877 (-) 654 WP_377476016.1 phycobilisome degradation protein NblB -
  P2A85_RS24830 (P2A85_24805) - 5720039..5720500 (-) 462 WP_377476017.1 CBS domain-containing protein -
  P2A85_RS24835 (P2A85_24810) - 5720622..5720945 (+) 324 WP_377476018.1 ferredoxin -
  P2A85_RS24840 (P2A85_24815) dacB 5720942..5722384 (+) 1443 WP_377476020.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  P2A85_RS24845 (P2A85_24820) - 5722531..5723421 (+) 891 WP_377476021.1 alpha/beta fold hydrolase -
  P2A85_RS24850 (P2A85_24825) recA 5723629..5724741 (-) 1113 WP_340517957.1 recombinase RecA Machinery gene
  P2A85_RS24855 (P2A85_24830) - 5724844..5724981 (-) 138 WP_377476023.1 hypothetical protein -
  P2A85_RS24860 (P2A85_24835) - 5725029..5726645 (+) 1617 WP_377476025.1 glycosyltransferase family 39 protein -
  P2A85_RS24865 (P2A85_24840) - 5726702..5728261 (+) 1560 WP_377476026.1 peptide ligase PGM1-related protein -
  P2A85_RS24870 (P2A85_24845) lepB 5728311..5728919 (-) 609 WP_341730439.1 signal peptidase I -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39860.50 Da        Isoelectric Point: 4.8475

>NTDB_id=808923 P2A85_RS24850 WP_340517957.1 5723629..5724741(-) (recA) [MAG: Microcoleus anatoxicus isolate Neu2020_A]
MAKKDTSTKITESPEKQKALTAVLSQIERSFGKGAIVRLGDATRMRVETIPSGALTLDIALGGGLPKGRVIEIYGPESSG
KTTLALHAIAEVQKSGGIAAFVDAEHALDPTYASALGVDIENLLVSQPDTGEMGLEIVDQLVRSVAVDIVVIDSVAALVP
RAEIEGDMGDSHMGLQARLMSQALRKITGNIGKSGCTVIFLNQLRQKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTL
KKGTEEYGNRTKVKVAKNKVAPPFRIAEFDIVFGKGISTLGCLTDLADEMGVITKKGSWYSYNGDNIAQGRDKVIQHMEK
NIDFKNEIEKLVREKLATGAVVSANSVAPVDDEDLEDLEDMEDVEDLEEI

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=808923 P2A85_RS24850 WP_340517957.1 5723629..5724741(-) (recA) [MAG: Microcoleus anatoxicus isolate Neu2020_A]
ATGGCAAAAAAAGATACGTCTACAAAAATTACTGAAAGCCCCGAAAAGCAAAAAGCCCTGACTGCGGTACTATCCCAGAT
CGAGCGCAGCTTTGGCAAAGGGGCGATCGTCCGATTGGGAGACGCCACTCGCATGAGGGTAGAAACCATTCCCAGCGGAG
CCCTGACACTTGACATCGCCTTGGGTGGCGGTTTGCCAAAAGGCCGAGTCATTGAAATCTATGGCCCAGAAAGTTCCGGT
AAAACCACTCTAGCGCTACACGCGATCGCCGAAGTCCAAAAATCCGGCGGTATCGCCGCCTTCGTCGATGCCGAACACGC
CCTAGATCCCACCTACGCCTCAGCCTTGGGTGTCGATATTGAAAATCTCCTAGTTTCCCAACCCGATACCGGAGAGATGG
GGCTAGAAATAGTCGATCAACTCGTCCGTTCCGTCGCCGTCGATATCGTAGTTATTGACTCCGTAGCAGCCCTAGTCCCC
CGCGCCGAAATTGAAGGCGACATGGGCGACTCCCACATGGGTTTGCAAGCCCGGTTGATGAGCCAAGCTTTGCGAAAAAT
CACCGGCAACATCGGCAAATCCGGCTGTACCGTTATTTTCCTCAACCAATTGCGCCAAAAAATCGGCGTCACTTACGGCA
ATCCCGAAACTACAACAGGGGGTAACGCTCTCAAATTCTACGCCAGCGTGCGACTCGATATTCGGCGGATTCAAACCTTG
AAAAAAGGCACAGAAGAGTACGGGAACCGCACCAAAGTTAAAGTTGCTAAAAATAAAGTTGCTCCACCCTTCCGCATTGC
CGAATTTGACATTGTATTTGGCAAAGGCATTTCTACTTTAGGCTGTTTGACAGACTTGGCCGACGAAATGGGAGTAATTA
CGAAAAAAGGTTCTTGGTATAGCTACAACGGCGATAACATTGCTCAAGGACGAGACAAAGTAATCCAACACATGGAGAAA
AATATCGATTTCAAAAATGAAATTGAGAAATTAGTGAGAGAAAAACTTGCTACTGGTGCTGTGGTTTCTGCTAATTCTGT
CGCTCCTGTGGACGATGAGGATCTAGAAGATCTAGAAGATATGGAAGATGTTGAAGATTTGGAAGAAATCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

64.244

92.973

0.597
  recA Acinetobacter baylyi ADP1

64.244

92.973

0.597
  recA Pseudomonas stutzeri DSM 10701

61.808

92.703

0.573
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.35

92.703

0.559
  recA Ralstonia pseudosolanacearum GMI1000

63.385

87.838

0.557
  recA Glaesserella parasuis strain SC1401

56.044

98.378

0.551
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

86.757

0.549
  recA Neisseria gonorrhoeae MS11

62.848

87.297

0.549
  recA Neisseria gonorrhoeae MS11

62.848

87.297

0.549
  recA Neisseria gonorrhoeae strain FA1090

62.848

87.297

0.549
  recA Streptococcus mitis NCTC 12261

55.342

98.649

0.546
  recA Latilactobacillus sakei subsp. sakei 23K

57.925

93.784

0.543
  recA Helicobacter pylori strain NCTC11637

57.637

93.784

0.541
  recA Helicobacter pylori 26695

57.637

93.784

0.541
  recA Streptococcus pneumoniae R6

56.447

94.324

0.532
  recA Streptococcus pneumoniae Rx1

56.447

94.324

0.532
  recA Streptococcus pneumoniae D39

56.447

94.324

0.532
  recA Streptococcus pneumoniae TIGR4

56.447

94.324

0.532
  recA Vibrio cholerae strain A1552

61.18

87.027

0.532
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.18

87.027

0.532
  recA Streptococcus pyogenes NZ131

55.874

94.324

0.527
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.059

91.892

0.524
  recA Streptococcus mutans UA159

59.077

87.838

0.519
  recA Streptococcus mitis SK321

59.077

87.838

0.519
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.012

92.162

0.516
  recA Lactococcus lactis subsp. cremoris KW2

58.642

87.568

0.514