Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JG736_RS09295 Genome accession   NZ_AP023059
Coordinates   1731984..1733018 (-) Length   344 a.a.
NCBI ID   WP_084274788.1    Uniprot ID   -
Organism   Nitratiruptor sp. YY08-13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1726984..1738018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JG736_RS09265 (NitYY0813_C1869) - 1727383..1727877 (+) 495 WP_201337623.1 metallophosphoesterase family protein -
  JG736_RS09270 (NitYY0813_C1870) - 1727874..1728713 (+) 840 WP_236583159.1 biotin synthase -
  JG736_RS09275 (NitYY0813_C1871) - 1728706..1729860 (+) 1155 WP_201337625.1 cation:proton antiporter -
  JG736_RS09280 (NitYY0813_C1872) - 1729838..1730434 (-) 597 WP_201337626.1 AMIN domain-containing protein -
  JG736_RS09285 (NitYY0813_C1873) - 1730431..1730700 (-) 270 WP_084274786.1 hypothetical protein -
  JG736_RS09290 (NitYY0813_C1874) eno 1730700..1731971 (-) 1272 WP_201337627.1 phosphopyruvate hydratase -
  JG736_RS09295 (NitYY0813_C1875) recA 1731984..1733018 (-) 1035 WP_084274788.1 recombinase RecA Machinery gene
  JG736_RS09300 (NitYY0813_C1876) - 1733252..1733719 (+) 468 WP_201337628.1 DUF2231 domain-containing protein -
  JG736_RS09305 (NitYY0813_C1877) - 1733761..1734834 (-) 1074 WP_201337629.1 acyltransferase -
  JG736_RS09310 (NitYY0813_C1878) - 1734926..1735789 (+) 864 WP_201337630.1 menaquinone biosynthesis family protein -
  JG736_RS09315 (NitYY0813_C1879) - 1735789..1736562 (+) 774 WP_201337631.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37109.68 Da        Isoelectric Point: 4.9567

>NTDB_id=80881 JG736_RS09295 WP_084274788.1 1731984..1733018(-) (recA) [Nitratiruptor sp. YY08-13]
MDPNKEKALELAIKQIDKAFGKGALVKLGEKEIEPIASISTGSLGLDMALGIGGVPKGRIIEIYGPESSGKTTLALQIIA
EAQKQGGIAAFIDAEHALDVFYAKNLGVDVENLLVSQPDFGEQALDIVETIARSGAVDVIVIDSVAALTPKAEIEGEMGD
AHVGLQARLMSQALRKLTGVLHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRIDVRRIATLKQGDSNIGN
RVRAKVVKNKVAPPFRQAEFDIMFGEGISKEGELIDYGVKLDVIDKSGSWFSYKDIKLGQGRENAKAYLKEHPDVAAQIE
DEIRQALGMNDSVMIVPENEMVED

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=80881 JG736_RS09295 WP_084274788.1 1731984..1733018(-) (recA) [Nitratiruptor sp. YY08-13]
ATGGATCCAAATAAAGAAAAAGCACTTGAACTTGCCATAAAGCAGATTGACAAAGCTTTTGGGAAAGGGGCTTTGGTCAA
ACTTGGCGAAAAAGAGATTGAACCAATTGCTTCTATCTCAACAGGTTCTCTTGGTTTGGATATGGCTCTTGGCATCGGTG
GTGTGCCAAAAGGGCGAATTATTGAGATATATGGACCAGAGAGTTCAGGAAAAACCACACTAGCTCTCCAAATAATTGCT
GAAGCGCAAAAGCAAGGAGGTATTGCTGCATTTATTGATGCTGAGCATGCACTCGATGTATTTTATGCAAAAAATTTGGG
TGTAGATGTAGAAAATCTCCTCGTCTCCCAGCCAGATTTTGGTGAGCAGGCTCTTGATATTGTAGAGACCATCGCAAGGA
GTGGGGCAGTTGATGTTATAGTAATAGACTCAGTCGCTGCTCTTACTCCAAAAGCAGAGATCGAAGGTGAAATGGGTGAT
GCGCACGTTGGATTGCAAGCAAGACTTATGAGTCAAGCTCTGCGCAAACTCACAGGTGTGTTGCATAAGATGAATACTAC
AGTTATTTTTATCAACCAGATCCGTATGAAGATTGGGGCTATGGGATATGGCACACCAGAGACAACAACAGGAGGAAATG
CGCTTAAATTCTATGCATCTGTACGTATAGATGTACGGCGCATTGCTACACTCAAGCAAGGTGATAGCAATATTGGAAAC
CGGGTACGTGCAAAAGTAGTGAAAAATAAAGTGGCTCCTCCATTTCGTCAAGCAGAATTTGATATTATGTTTGGTGAAGG
AATTAGTAAAGAGGGTGAGCTTATCGATTATGGTGTGAAGCTAGATGTTATCGATAAGAGTGGTAGTTGGTTTAGTTATA
AAGATATTAAGTTGGGGCAGGGGAGAGAGAATGCAAAAGCGTATCTCAAAGAGCATCCTGACGTTGCTGCCCAAATTGAA
GATGAGATCCGTCAAGCTCTTGGTATGAATGATAGTGTAATGATAGTTCCAGAAAATGAAATGGTAGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori 26695

76.385

99.709

0.762
  recA Helicobacter pylori strain NCTC11637

76.093

99.709

0.759
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.723

95.64

0.753
  recA Bacillus subtilis subsp. subtilis str. 168

65.046

95.64

0.622
  recA Pseudomonas stutzeri DSM 10701

65.443

95.058

0.622
  recA Glaesserella parasuis strain SC1401

64.35

96.221

0.619
  recA Acinetobacter baumannii D1279779

61.516

99.709

0.613
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.063

96.802

0.61
  recA Neisseria gonorrhoeae MS11

64.615

94.477

0.61
  recA Neisseria gonorrhoeae strain FA1090

64.615

94.477

0.61
  recA Neisseria gonorrhoeae MS11

64.615

94.477

0.61
  recA Ralstonia pseudosolanacearum GMI1000

63.526

95.64

0.608
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.465

100

0.605
  recA Vibrio cholerae strain A1552

60.465

100

0.605
  recA Acinetobacter baylyi ADP1

62.997

95.058

0.599
  recA Latilactobacillus sakei subsp. sakei 23K

59.941

97.965

0.587
  recA Lactococcus lactis subsp. cremoris KW2

60.423

96.221

0.581
  recA Streptococcus mitis SK321

59.819

96.221

0.576
  recA Streptococcus pneumoniae Rx1

59.517

96.221

0.573
  recA Streptococcus pneumoniae D39

59.517

96.221

0.573
  recA Streptococcus pneumoniae R6

59.517

96.221

0.573
  recA Streptococcus pneumoniae TIGR4

59.517

96.221

0.573
  recA Streptococcus mitis NCTC 12261

59.215

96.221

0.57
  recA Streptococcus pyogenes NZ131

59.451

95.349

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.642

94.186

0.552
  recA Streptococcus mutans UA159

57.447

95.64

0.549

Multiple sequence alignment