Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PZ898_RS11245 Genome accession   NZ_CP120710
Coordinates   2500475..2501476 (+) Length   333 a.a.
NCBI ID   WP_062676286.1    Uniprot ID   -
Organism   Chryseobacterium sp. WX     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2495475..2506476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZ898_RS11230 (PZ898_11230) gap 2496252..2497256 (+) 1005 WP_047096698.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  PZ898_RS11235 (PZ898_11235) - 2497316..2498635 (-) 1320 WP_120232865.1 hypothetical protein -
  PZ898_RS11240 (PZ898_11240) - 2498787..2499977 (+) 1191 WP_277695526.1 oxygenase MpaB family protein -
  PZ898_RS11245 (PZ898_11245) recA 2500475..2501476 (+) 1002 WP_062676286.1 recombinase RecA Machinery gene
  PZ898_RS11250 (PZ898_11250) - 2501785..2503218 (-) 1434 WP_277695527.1 hypothetical protein -
  PZ898_RS11255 (PZ898_11255) - 2503360..2506254 (-) 2895 WP_277695528.1 prolyl oligopeptidase family serine peptidase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35868.24 Da        Isoelectric Point: 5.3432

>NTDB_id=808133 PZ898_RS11245 WP_062676286.1 2500475..2501476(+) (recA) [Chryseobacterium sp. WX]
MSNIDDKKKALALVLDKLDKTYGKGTVMTLGDESIDNTIEVIPSGSLGLDIALGIGGYPKGRIIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRTYAAKLGIDLENLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGE
MGDSKMGLHARLMSQALRKLTATISRTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRIDIRKASAPIKQGDEA
IGSRVKVKIVKNKVAPPFKQAEFDIMYGEGVSKVGEILDTAVDMGIVKKSGSWFSYEETKLGQGRDAVKDVLRDNPDLAE
ELEAKIKEEMKNK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=808133 PZ898_RS11245 WP_062676286.1 2500475..2501476(+) (recA) [Chryseobacterium sp. WX]
ATGAGTAACATTGATGATAAGAAAAAAGCACTCGCTTTAGTGCTTGACAAGCTAGATAAAACATATGGAAAGGGAACAGT
AATGACTTTAGGTGATGAATCTATAGACAATACTATCGAAGTAATTCCTTCCGGTTCTTTAGGTTTAGATATTGCTTTAG
GAATAGGCGGATACCCAAAAGGGAGAATCATAGAGATATATGGTCCGGAATCTTCAGGTAAAACAACGTTGACCCTTCAT
GCTATTGCTGAGGCTCAAAAAGCAGGTGGTATTGCAGCATTCATTGATGCTGAACACGCTTTCGACAGAACATATGCTGC
GAAATTAGGAATTGATCTTGAAAACCTGATCATTTCTCAGCCGGACAACGGTGAGCAGGCTTTGGAAATTGCAGATAACT
TAATCCGTTCAGGAGCTATTGATATCGTTGTAATTGACTCTGTTGCTGCTCTTACACCAAAAGCAGAGATTGAAGGTGAA
ATGGGGGATTCCAAAATGGGTCTTCATGCAAGATTGATGTCTCAGGCATTAAGAAAGCTTACCGCTACGATTTCAAGAAC
AAAATGTACCGTAATCTTCATCAACCAGTTGAGAGAAAAAATCGGTGTTATGTTTGGAAACCCTGAAACGACTACCGGAG
GTAACGCCCTTAAGTTCTACGCTTCTGTAAGAATTGATATCAGAAAAGCAAGCGCACCTATCAAACAAGGTGATGAAGCT
ATCGGTAGCCGTGTGAAAGTGAAAATTGTGAAAAACAAAGTAGCACCTCCTTTCAAGCAGGCAGAATTCGATATCATGTA
TGGAGAAGGAGTTTCTAAAGTAGGAGAAATTCTTGATACTGCTGTAGATATGGGAATTGTGAAGAAAAGCGGATCATGGT
TCAGCTACGAAGAGACTAAATTGGGTCAGGGACGTGATGCTGTAAAAGATGTTTTAAGAGACAATCCGGATCTTGCTGAA
GAATTGGAAGCTAAGATCAAGGAAGAAATGAAAAACAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

80.18

100

0.802
  recA Acinetobacter baylyi ADP1

64.742

98.799

0.64
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

98.198

0.634
  recA Acinetobacter baumannii D1279779

64.417

97.898

0.631
  recA Glaesserella parasuis strain SC1401

63.914

98.198

0.628
  recA Helicobacter pylori strain NCTC11637

63.303

98.198

0.622
  recA Helicobacter pylori 26695

63.303

98.198

0.622
  recA Bacillus subtilis subsp. subtilis str. 168

62.883

97.898

0.616
  recA Ralstonia pseudosolanacearum GMI1000

64.856

93.994

0.61
  recA Neisseria gonorrhoeae strain FA1090

62.229

96.997

0.604
  recA Neisseria gonorrhoeae MS11

62.229

96.997

0.604
  recA Neisseria gonorrhoeae MS11

62.229

96.997

0.604
  recA Streptococcus pyogenes NZ131

61.162

98.198

0.601
  recA Streptococcus mitis NCTC 12261

61.043

97.898

0.598
  recA Pseudomonas stutzeri DSM 10701

61.043

97.898

0.598
  recA Streptococcus mitis SK321

61.043

97.898

0.598
  recA Lactococcus lactis subsp. cremoris KW2

60.123

97.898

0.589
  recA Streptococcus mutans UA159

59.939

98.198

0.589
  recA Vibrio cholerae strain A1552

59.271

98.799

0.586
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.271

98.799

0.586
  recA Streptococcus pneumoniae TIGR4

59.692

97.598

0.583
  recA Streptococcus pneumoniae Rx1

59.692

97.598

0.583
  recA Streptococcus pneumoniae D39

59.692

97.598

0.583
  recA Streptococcus pneumoniae R6

59.692

97.598

0.583
  recA Latilactobacillus sakei subsp. sakei 23K

59.133

96.997

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

97.898

0.553