Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PZ892_RS14540 Genome accession   NZ_CP120709
Coordinates   3424061..3425086 (+) Length   341 a.a.
NCBI ID   WP_094257855.1    Uniprot ID   A0A8H9FZY5
Organism   Sphingobacterium sp. WM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3419061..3430086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZ892_RS14525 (PZ892_14525) - 3421278..3422900 (+) 1623 WP_094257852.1 S8 family peptidase -
  PZ892_RS14530 (PZ892_14530) - 3422966..3423157 (+) 192 WP_144043707.1 hypothetical protein -
  PZ892_RS14535 (PZ892_14535) nth 3423257..3423919 (+) 663 WP_094257854.1 endonuclease III -
  PZ892_RS14540 (PZ892_14540) recA 3424061..3425086 (+) 1026 WP_094257855.1 recombinase RecA Machinery gene
  PZ892_RS14545 (PZ892_14545) - 3425286..3426473 (+) 1188 WP_094257856.1 metallophosphoesterase -
  PZ892_RS14550 (PZ892_14550) - 3426517..3427215 (-) 699 WP_094257857.1 ABC transporter ATP-binding protein -
  PZ892_RS14555 (PZ892_14555) - 3427242..3428723 (-) 1482 WP_094257858.1 DUF5687 family protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36719.18 Da        Isoelectric Point: 4.8741

>NTDB_id=808125 PZ892_RS14540 WP_094257855.1 3424061..3425086(+) (recA) [Sphingobacterium sp. WM]
MSNSDKLKALQLTLDKLEKSYGKGTIMKLGDSAVEPIEAISTGSLGLDIALGIGGVPKGRIIEIYGPESSGKTTLATHIV
AEAQKKGGIAAIIDAEHAFDKYYAQKLGVDIENLLISQPDNGEQALEIADNLIRSGAIDVIVIDSVAALVPKGEIEGEMG
ESKMGLQARLMSQALRKLTGTIAKTNCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRTSQIKDSDEVSGN
RVKVKIVKNKVAPPFRIAEFDIMFGEGISKVGEIIDLGVEYNIIKKSGSWFSYGDTKLGQGRDAVKTLLLDNPDLMDELE
TKIRAEVSGVDLDQAAIKDED

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=808125 PZ892_RS14540 WP_094257855.1 3424061..3425086(+) (recA) [Sphingobacterium sp. WM]
ATGAGCAACTCAGACAAATTAAAAGCATTACAGCTTACTTTAGATAAATTAGAAAAGAGCTACGGAAAGGGAACCATCAT
GAAGTTAGGTGATTCTGCTGTAGAACCAATTGAAGCTATTTCTACTGGTTCATTAGGTTTAGATATCGCATTAGGTATTG
GTGGTGTTCCAAAGGGTCGTATCATTGAAATCTATGGTCCAGAATCTTCTGGTAAAACTACTTTGGCTACTCATATCGTA
GCTGAGGCTCAGAAAAAAGGTGGTATTGCAGCAATTATCGATGCTGAACATGCTTTTGATAAATATTATGCGCAAAAACT
AGGGGTTGATATTGAAAATCTATTGATTTCACAACCTGACAACGGTGAACAGGCCTTAGAAATTGCAGATAACCTAATCC
GTTCAGGAGCAATTGATGTTATTGTAATTGACTCGGTAGCAGCATTGGTTCCTAAGGGCGAGATTGAAGGTGAAATGGGA
GAATCTAAAATGGGTCTTCAAGCTCGTTTGATGTCTCAAGCCTTACGTAAATTGACAGGTACTATTGCAAAAACAAACTG
TTGTTGTATTTTCATCAACCAATTACGTGAGAAAATCGGTGTAATGTTTGGTAACCCAGAAACAACTACTGGTGGTAATG
CATTAAAATTCTACGCTTCGGTGCGTTTAGATATTCGTCGTACATCACAAATCAAAGATTCTGATGAGGTATCTGGTAAC
CGTGTGAAAGTGAAGATTGTTAAAAACAAAGTAGCACCTCCATTCCGTATTGCAGAATTTGATATCATGTTCGGTGAAGG
TATTTCTAAAGTTGGAGAAATCATTGACCTTGGTGTGGAATATAACATCATTAAAAAATCAGGTTCTTGGTTTAGCTATG
GTGACACTAAATTAGGTCAAGGCCGTGATGCTGTAAAAACTTTATTGTTGGATAACCCTGATTTAATGGATGAATTAGAG
ACAAAAATCAGAGCTGAAGTTAGTGGGGTTGATTTAGATCAGGCAGCTATCAAAGACGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

71.903

97.067

0.698
  recA Neisseria gonorrhoeae MS11

65.957

96.481

0.636
  recA Neisseria gonorrhoeae strain FA1090

65.957

96.481

0.636
  recA Neisseria gonorrhoeae MS11

65.957

96.481

0.636
  recA Acinetobacter baylyi ADP1

63.609

99.12

0.63
  recA Ralstonia pseudosolanacearum GMI1000

66.049

95.015

0.628
  recA Helicobacter pylori strain NCTC11637

65.337

95.601

0.625
  recA Helicobacter pylori 26695

65.031

95.601

0.622
  recA Bacillus subtilis subsp. subtilis str. 168

64.634

96.188

0.622
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.015

94.721

0.616
  recA Glaesserella parasuis strain SC1401

65.517

93.548

0.613
  recA Acinetobacter baumannii D1279779

64

95.308

0.61
  recA Pseudomonas stutzeri DSM 10701

62.769

95.308

0.598
  recA Streptococcus mitis SK321

58.772

100

0.589
  recA Streptococcus mitis NCTC 12261

58.772

100

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

94.428

0.587
  recA Vibrio cholerae strain A1552

62.112

94.428

0.587
  recA Streptococcus pneumoniae Rx1

58.529

99.707

0.584
  recA Streptococcus pneumoniae D39

58.529

99.707

0.584
  recA Streptococcus pneumoniae R6

58.529

99.707

0.584
  recA Streptococcus pneumoniae TIGR4

58.529

99.707

0.584
  recA Lactococcus lactis subsp. cremoris KW2

60.736

95.601

0.581
  recA Latilactobacillus sakei subsp. sakei 23K

60.615

95.308

0.578
  recA Streptococcus pyogenes NZ131

60.802

95.015

0.578
  recA Streptococcus mutans UA159

57.357

97.654

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.481

95.015

0.537