Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | LHUE2_RS04650 | Genome accession | NZ_CP120688 |
| Coordinates | 950913..951956 (+) | Length | 347 a.a. |
| NCBI ID | WP_049169076.1 | Uniprot ID | - |
| Organism | Lacticaseibacillus huelsenbergensis strain DSM 115424 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 952558..964263 | 950913..951956 | flank | 602 |
Gene organization within MGE regions
Location: 950913..964263
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LHUE2_RS04650 (LHUE2_000930) | recA | 950913..951956 (+) | 1044 | WP_049169076.1 | recombinase RecA | Machinery gene |
| LHUE2_RS04655 (LHUE2_000931) | rny | 952558..954129 (+) | 1572 | WP_010489446.1 | ribonuclease Y | - |
| LHUE2_RS04660 (LHUE2_000932) | - | 954275..954928 (-) | 654 | WP_049169075.1 | YigZ family protein | - |
| LHUE2_RS04665 (LHUE2_000933) | - | 954956..956218 (+) | 1263 | WP_049169074.1 | DEAD/DEAH box helicase | - |
| LHUE2_RS04670 (LHUE2_000934) | - | 956376..956894 (+) | 519 | WP_025012517.1 | ComF family protein | - |
| LHUE2_RS04675 (LHUE2_000935) | hpf | 957019..957576 (+) | 558 | WP_010489439.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| LHUE2_RS04680 (LHUE2_000936) | secA | 957845..960208 (+) | 2364 | WP_039638826.1 | preprotein translocase subunit SecA | - |
| LHUE2_RS04685 (LHUE2_000937) | prfB | 960467..961583 (+) | 1117 | WP_107750272.1 | peptide chain release factor 2 | - |
| LHUE2_RS04690 (LHUE2_000938) | ftsE | 961661..962347 (+) | 687 | WP_025012520.1 | cell division ATP-binding protein FtsE | - |
| LHUE2_RS04695 (LHUE2_000939) | ftsX | 962337..963224 (+) | 888 | WP_049169073.1 | permease-like cell division protein FtsX | - |
| LHUE2_RS04700 (LHUE2_000940) | - | 963370..964263 (-) | 894 | WP_049171184.1 | IS3 family transposase | - |
Sequence
Protein
Download Length: 347 a.a. Molecular weight: 37329.72 Da Isoelectric Point: 5.5279
>NTDB_id=807836 LHUE2_RS04650 WP_049169076.1 950913..951956(+) (recA) [Lacticaseibacillus huelsenbergensis strain DSM 115424]
MADTERQEALATALKKIEKNFGKGAIMKMGDKADTRVSAISSGSLAIDEVLGVGGLPRGRIVEMYGPESSGKTTVALHAV
AMVQQHGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDILVIDSVAALVPQAEIDGDMG
DAHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGIVFGNPEITPGGRALKFYATVRLEIRRSEQIKNGAEIIGN
RTKIKVVKNKVAPPFKVAIVDIMYGRGISQSGELVDMAVEKDIVEKSGSWYAYQGERIGQGREHAKAYLETHEEMRKKIE
GQVREAYGMPLNQVIEVEDPDVSARAS
MADTERQEALATALKKIEKNFGKGAIMKMGDKADTRVSAISSGSLAIDEVLGVGGLPRGRIVEMYGPESSGKTTVALHAV
AMVQQHGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDILVIDSVAALVPQAEIDGDMG
DAHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGIVFGNPEITPGGRALKFYATVRLEIRRSEQIKNGAEIIGN
RTKIKVVKNKVAPPFKVAIVDIMYGRGISQSGELVDMAVEKDIVEKSGSWYAYQGERIGQGREHAKAYLETHEEMRKKIE
GQVREAYGMPLNQVIEVEDPDVSARAS
Nucleotide
Download Length: 1044 bp
>NTDB_id=807836 LHUE2_RS04650 WP_049169076.1 950913..951956(+) (recA) [Lacticaseibacillus huelsenbergensis strain DSM 115424]
GTGGCAGACACAGAACGACAAGAAGCGTTAGCAACAGCACTAAAAAAGATTGAAAAGAATTTTGGCAAAGGTGCCATCAT
GAAAATGGGGGACAAGGCTGATACGCGGGTTTCGGCCATTTCCAGTGGCTCACTTGCGATTGACGAAGTGCTTGGCGTTG
GTGGGTTGCCACGCGGGCGGATTGTTGAGATGTACGGTCCTGAAAGCTCGGGGAAAACCACCGTTGCCTTGCATGCGGTG
GCAATGGTGCAGCAGCATGGCGGAACCGCCGCGTATATTGATGCGGAAAATGCTATGGATCCTAAGTATGCGACCGCGCT
GGGCGTCAATATTGATGAACTGTTGCTCTCTCAACCGGATACTGGAGAACAAGGGCTGGAAATTGCTGACGAATTGGTTG
CTTCCGGAGCAATTGATATTCTGGTGATTGATTCGGTGGCCGCGCTGGTTCCGCAAGCCGAGATTGACGGCGATATGGGC
GATGCACACGTTGGCCTACAGGCGCGACTGATGTCACAAGCGCTGCGGAAGCTGTCTGGCAACATCAGTAAGACGAAAAC
TATTGCCGTCTTTATTAACCAAATTCGTGAGAAAGTCGGCATCGTTTTTGGCAACCCAGAAATAACCCCGGGTGGTCGGG
CATTAAAGTTTTATGCAACAGTGCGGCTGGAAATCCGCCGTTCCGAACAGATTAAAAACGGTGCTGAGATTATTGGCAAT
CGCACTAAAATCAAGGTCGTTAAAAATAAGGTGGCGCCGCCTTTTAAAGTAGCGATTGTGGATATTATGTATGGCCGCGG
TATTTCGCAAAGCGGTGAACTCGTCGATATGGCGGTTGAAAAAGACATCGTTGAAAAGTCCGGGTCGTGGTATGCCTACC
AAGGTGAGCGAATCGGCCAAGGACGCGAGCATGCCAAGGCTTATCTTGAAACTCATGAGGAAATGCGTAAAAAGATTGAG
GGGCAGGTGCGTGAGGCATACGGAATGCCGTTAAACCAGGTGATTGAAGTGGAAGATCCGGATGTATCGGCGCGAGCTTC
CTAA
GTGGCAGACACAGAACGACAAGAAGCGTTAGCAACAGCACTAAAAAAGATTGAAAAGAATTTTGGCAAAGGTGCCATCAT
GAAAATGGGGGACAAGGCTGATACGCGGGTTTCGGCCATTTCCAGTGGCTCACTTGCGATTGACGAAGTGCTTGGCGTTG
GTGGGTTGCCACGCGGGCGGATTGTTGAGATGTACGGTCCTGAAAGCTCGGGGAAAACCACCGTTGCCTTGCATGCGGTG
GCAATGGTGCAGCAGCATGGCGGAACCGCCGCGTATATTGATGCGGAAAATGCTATGGATCCTAAGTATGCGACCGCGCT
GGGCGTCAATATTGATGAACTGTTGCTCTCTCAACCGGATACTGGAGAACAAGGGCTGGAAATTGCTGACGAATTGGTTG
CTTCCGGAGCAATTGATATTCTGGTGATTGATTCGGTGGCCGCGCTGGTTCCGCAAGCCGAGATTGACGGCGATATGGGC
GATGCACACGTTGGCCTACAGGCGCGACTGATGTCACAAGCGCTGCGGAAGCTGTCTGGCAACATCAGTAAGACGAAAAC
TATTGCCGTCTTTATTAACCAAATTCGTGAGAAAGTCGGCATCGTTTTTGGCAACCCAGAAATAACCCCGGGTGGTCGGG
CATTAAAGTTTTATGCAACAGTGCGGCTGGAAATCCGCCGTTCCGAACAGATTAAAAACGGTGCTGAGATTATTGGCAAT
CGCACTAAAATCAAGGTCGTTAAAAATAAGGTGGCGCCGCCTTTTAAAGTAGCGATTGTGGATATTATGTATGGCCGCGG
TATTTCGCAAAGCGGTGAACTCGTCGATATGGCGGTTGAAAAAGACATCGTTGAAAAGTCCGGGTCGTGGTATGCCTACC
AAGGTGAGCGAATCGGCCAAGGACGCGAGCATGCCAAGGCTTATCTTGAAACTCATGAGGAAATGCGTAAAAAGATTGAG
GGGCAGGTGCGTGAGGCATACGGAATGCCGTTAAACCAGGTGATTGAAGTGGAAGATCCGGATGTATCGGCGCGAGCTTC
CTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.