Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HXS57_RS04775 Genome accession   NZ_AP023039
Coordinates   939173..940198 (-) Length   341 a.a.
NCBI ID   WP_006565321.1    Uniprot ID   A0A6J4CYX2
Organism   Helicobacter suis strain NHP19-4003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 934173..945198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS57_RS04745 (NHP194003_09510) - 934341..934937 (-) 597 WP_176485105.1 class II aldolase and adducin N-terminal domain-containing protein -
  HXS57_RS04750 (NHP194003_09520) - 934934..935782 (-) 849 WP_104705655.1 ATP-binding cassette domain-containing protein -
  HXS57_RS04755 (NHP194003_09530) - 935792..936673 (-) 882 WP_232088013.1 pseudouridine synthase family protein -
  HXS57_RS04760 (NHP194003_09540) - 936673..938304 (-) 1632 WP_176485892.1 CTP synthase -
  HXS57_RS04765 (NHP194003_09550) - 938323..938919 (-) 597 WP_034376921.1 AMIN domain-containing protein -
  HXS57_RS04770 (NHP194003_09560) - 938930..939172 (-) 243 WP_034376919.1 hypothetical protein -
  HXS57_RS04775 (NHP194003_09570) recA 939173..940198 (-) 1026 WP_006565321.1 recombinase RecA Machinery gene
  HXS57_RS09310 - 940336..940464 (+) 129 WP_255298804.1 hypothetical protein -
  HXS57_RS04780 (NHP194003_09580) thrS 940488..942293 (+) 1806 WP_006564449.1 threonine--tRNA ligase -
  HXS57_RS04785 (NHP194003_09590) infC 942290..942805 (+) 516 WP_006564448.1 translation initiation factor IF-3 -
  HXS57_RS04790 (NHP194003_09600) rpmI 942828..943022 (+) 195 WP_006565320.1 50S ribosomal protein L35 -
  HXS57_RS04795 (NHP194003_09610) rplT 943095..943457 (+) 363 WP_006564446.1 50S ribosomal protein L20 -
  HXS57_RS04800 (NHP194003_09620) - 943671..944522 (+) 852 WP_006564445.1 outer membrane protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37063.53 Da        Isoelectric Point: 5.5141

>NTDB_id=80775 HXS57_RS04775 WP_006565321.1 939173..940198(-) (recA) [Helicobacter suis strain NHP19-4003]
MDEQKQKALELAIKQIDKQFGKGALMRLGDKEVEHIEATSTGSLGLDMALGIGGVPKGRIVEVYGPESSGKTTLTLHIIA
QAQREGGTCAFIDAEHALDVQYAKKLGVDTDNLLISQPDTGEEALEILETLARSGAVDVIVVDSVAALTPRAEIEGDMGD
QHVGLQARLMSQALRKITGILHKMNTTLIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDIRRIATLKQNEHPIGN
RVRVKVVKNKVAPPFKEAEFDIMYGDGISQAGELIDYGVKLEVIEKSGAWFSYLDKKLGQGREAAKLSLKNDGDLATEIA
GKIKEKLFDKSDVEWAMPEGE

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=80775 HXS57_RS04775 WP_006565321.1 939173..940198(-) (recA) [Helicobacter suis strain NHP19-4003]
GTGGACGAACAAAAACAAAAGGCGTTAGAGTTAGCAATTAAACAGATTGATAAACAATTTGGTAAGGGGGCGCTGATGCG
TTTGGGCGATAAAGAAGTTGAACACATTGAGGCCACCTCTACCGGATCGCTAGGTTTGGATATGGCTTTAGGGATTGGAG
GCGTGCCTAAGGGGCGCATTGTAGAAGTTTATGGACCAGAATCAAGCGGGAAAACCACCTTGACCTTGCATATCATCGCG
CAAGCACAAAGAGAGGGGGGAACTTGTGCCTTTATTGATGCCGAGCATGCTTTAGATGTGCAGTATGCCAAAAAATTAGG
GGTGGATACAGATAATCTACTCATTTCTCAGCCAGATACCGGAGAAGAAGCCCTAGAAATTTTAGAGACCTTAGCGCGTA
GCGGGGCGGTAGATGTGATTGTGGTAGATTCAGTAGCCGCGCTCACCCCCCGTGCAGAAATTGAAGGCGACATGGGCGAT
CAACATGTAGGTTTGCAGGCGCGTTTAATGAGTCAGGCCTTGCGCAAGATCACCGGAATTTTACACAAGATGAATACCAC
CTTAATTTTTATCAACCAGATTCGCATGAAAATTGGGACTATGGGTTATGGAAGTCCTGAGACCACCACAGGGGGCAATG
CCTTAAAGTTTTATGCCAGTGTACGCATAGACATCCGCCGCATTGCTACTCTTAAACAAAACGAACACCCCATTGGTAAT
CGCGTAAGAGTCAAGGTGGTTAAAAATAAAGTAGCGCCCCCTTTTAAAGAGGCAGAGTTTGATATTATGTATGGAGATGG
AATTAGCCAAGCGGGGGAATTGATTGACTATGGTGTTAAGCTAGAGGTGATAGAAAAAAGCGGGGCGTGGTTTAGCTATT
TGGATAAGAAATTAGGGCAGGGGAGAGAGGCGGCTAAGTTAAGCTTAAAAAATGACGGGGATTTAGCAACAGAGATTGCC
GGTAAAATTAAAGAAAAACTTTTTGATAAGTCTGATGTAGAGTGGGCTATGCCAGAAGGGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6J4CYX2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

78.402

99.12

0.777
  recA Helicobacter pylori 26695

78.107

99.12

0.774
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

75.535

95.894

0.724
  recA Acinetobacter baylyi ADP1

65.205

100

0.654
  recA Pseudomonas stutzeri DSM 10701

64.809

100

0.648
  recA Vibrio cholerae strain A1552

65.569

97.947

0.642
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.569

97.947

0.642
  recA Acinetobacter baumannii D1279779

65.854

96.188

0.633
  recA Glaesserella parasuis strain SC1401

65.538

95.308

0.625
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.253

97.361

0.616
  recA Neisseria gonorrhoeae MS11

64.308

95.308

0.613
  recA Neisseria gonorrhoeae MS11

64.308

95.308

0.613
  recA Neisseria gonorrhoeae strain FA1090

64.308

95.308

0.613
  recA Ralstonia pseudosolanacearum GMI1000

66.346

91.496

0.607
  recA Bacillus subtilis subsp. subtilis str. 168

63.551

94.135

0.598
  recA Lactococcus lactis subsp. cremoris KW2

57.738

98.534

0.569
  recA Streptococcus pyogenes NZ131

58.663

96.481

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

59.627

94.428

0.563
  recA Streptococcus pneumoniae Rx1

58.232

96.188

0.56
  recA Streptococcus pneumoniae D39

58.232

96.188

0.56
  recA Streptococcus pneumoniae R6

58.232

96.188

0.56
  recA Streptococcus pneumoniae TIGR4

58.232

96.188

0.56
  recA Streptococcus mitis NCTC 12261

58.154

95.308

0.554
  recA Streptococcus mitis SK321

58.154

95.308

0.554
  recA Streptococcus mutans UA159

57.669

95.601

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.921

88.563

0.548

Multiple sequence alignment