Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   P0M12_RS25650 Genome accession   NZ_CP120422
Coordinates   5453555..5454592 (+) Length   345 a.a.
NCBI ID   WP_007735170.1    Uniprot ID   A0AB38RJK7
Organism   Rhodococcus sp. RCBS9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5448555..5459592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0M12_RS25620 (P0M12_25620) - 5448686..5448862 (+) 177 WP_003942133.1 hypothetical protein -
  P0M12_RS25625 (P0M12_25625) - 5448880..5449593 (+) 714 WP_063316521.1 PIG-L deacetylase family protein -
  P0M12_RS25630 (P0M12_25630) - 5449667..5450305 (+) 639 WP_003942216.1 TetR/AcrR family transcriptional regulator -
  P0M12_RS25635 (P0M12_25635) - 5450308..5451843 (+) 1536 WP_064444528.1 glycerol-3-phosphate dehydrogenase/oxidase -
  P0M12_RS25640 (P0M12_25640) - 5451856..5453019 (+) 1164 WP_042450679.1 nucleotide disphospho-sugar-binding domain-containing protein -
  P0M12_RS25645 (P0M12_25645) - 5453072..5453266 (+) 195 WP_003942185.1 DUF3046 domain-containing protein -
  P0M12_RS25650 (P0M12_25650) recA 5453555..5454592 (+) 1038 WP_007735170.1 recombinase RecA Machinery gene
  P0M12_RS25655 (P0M12_25655) recX 5454601..5455179 (+) 579 WP_050655795.1 recombination regulator RecX -
  P0M12_RS25660 (P0M12_25660) - 5455295..5456191 (-) 897 WP_007735172.1 amino acid ABC transporter permease -
  P0M12_RS25665 (P0M12_25665) - 5456188..5456868 (-) 681 WP_019748198.1 amino acid ABC transporter permease -
  P0M12_RS25670 (P0M12_25670) - 5456968..5457804 (-) 837 WP_020907523.1 glutamate ABC transporter substrate-binding protein -
  P0M12_RS25675 (P0M12_25675) gluA 5457931..5458659 (-) 729 WP_007735175.1 glutamate ABC transporter ATP-binding protein GluA -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 36798.94 Da        Isoelectric Point: 5.0310

>NTDB_id=805584 P0M12_RS25650 WP_007735170.1 5453555..5454592(+) (recA) [Rhodococcus sp. RCBS9]
MAPQAPDRDKALDLALAQIDKNFGKGSVMRLGEGVRQPIAVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALH
AVANAQANGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQPDTGEQALEITDMLIRSGALDIVVIDSVAALVPRAEIEGE
MGDSHVGLQARLMSQALRKITGAMNNSGTTVIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDIRRIETLKDGTDAV
GNRTRVKVVKNKVAPPFKQAEFDILYGQGISKEGSLIDMGVEHGFIRKSGSWYTYEGDQLGQGKENARKFLLENTDIRDE
IEKKIKEKLGIGADVTATDEAPADF

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=805584 P0M12_RS25650 WP_007735170.1 5453555..5454592(+) (recA) [Rhodococcus sp. RCBS9]
ATGGCACCACAGGCACCTGATCGGGACAAGGCACTCGACCTCGCGTTGGCGCAGATCGACAAGAACTTCGGCAAGGGTTC
GGTGATGCGCCTGGGTGAGGGTGTCCGCCAGCCCATCGCCGTCATTCCCACCGGTTCCATCGCGCTCGACGTCGCGCTGG
GTATCGGCGGACTGCCGCGTGGCCGCGTCATCGAGATCTACGGCCCGGAGTCCTCGGGTAAGACCACCGTGGCACTGCAC
GCAGTTGCCAATGCTCAGGCCAACGGCGGCATCGCGGCGTTCATCGACGCGGAGCACGCACTCGATCCCGACTATGCAGC
CAAGCTGGGCGTCGATACCGATGCACTCCTGGTCTCGCAGCCCGATACGGGTGAGCAGGCCCTCGAAATCACCGACATGC
TGATCCGTTCAGGCGCCCTCGACATCGTCGTGATCGACTCCGTGGCCGCTCTTGTTCCTCGCGCCGAGATCGAAGGCGAG
ATGGGTGACAGCCACGTCGGTTTGCAGGCTCGACTGATGAGCCAGGCGCTGCGCAAGATCACCGGTGCCATGAACAACTC
GGGCACCACCGTCATCTTCATCAACCAGCTTCGCGAGAAGATCGGTGTGATGTTCGGTTCTCCCGAAACCACCACCGGTG
GTAAGGCACTGAAGTTCTACGCTTCGGTCCGCCTCGACATCCGTCGTATCGAAACTCTCAAGGACGGTACCGACGCAGTG
GGTAACCGCACTCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCCGTTCAAGCAGGCCGAGTTCGACATTCTCTACGG
CCAGGGCATCAGCAAGGAAGGCTCGCTCATCGACATGGGTGTCGAGCACGGGTTCATCCGCAAGTCCGGCTCCTGGTACA
CCTACGAAGGTGACCAGTTGGGTCAGGGCAAGGAAAATGCTCGTAAGTTCTTGCTGGAGAACACCGATATCCGTGACGAG
ATCGAGAAGAAGATCAAGGAAAAGCTCGGTATCGGTGCTGACGTCACTGCAACCGACGAAGCTCCCGCCGACTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

69.231

94.203

0.652
  recA Pseudomonas stutzeri DSM 10701

68.731

93.623

0.643
  recA Neisseria gonorrhoeae MS11

64.602

98.261

0.635
  recA Neisseria gonorrhoeae strain FA1090

64.602

98.261

0.635
  recA Neisseria gonorrhoeae MS11

64.602

98.261

0.635
  recA Acinetobacter baylyi ADP1

63.93

98.841

0.632
  recA Acinetobacter baumannii D1279779

63.743

99.13

0.632
  recA Latilactobacillus sakei subsp. sakei 23K

64.865

96.522

0.626
  recA Ralstonia pseudosolanacearum GMI1000

65.653

95.362

0.626
  recA Streptococcus pneumoniae D39

62.537

98.261

0.614
  recA Streptococcus pneumoniae Rx1

62.537

98.261

0.614
  recA Streptococcus pneumoniae R6

62.537

98.261

0.614
  recA Streptococcus pneumoniae TIGR4

62.537

98.261

0.614
  recA Helicobacter pylori strain NCTC11637

62.611

97.681

0.612
  recA Helicobacter pylori 26695

62.611

97.681

0.612
  recA Streptococcus mitis NCTC 12261

63.222

95.362

0.603
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.396

93.623

0.603
  recA Vibrio cholerae strain A1552

64.396

93.623

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.493

97.101

0.597
  recA Streptococcus mitis SK321

62.614

95.362

0.597
  recA Lactococcus lactis subsp. cremoris KW2

62.614

95.362

0.597
  recA Streptococcus mutans UA159

62.614

95.362

0.597
  recA Streptococcus pyogenes NZ131

62.5

95.072

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.31

95.362

0.594
  recA Glaesserella parasuis strain SC1401

62.769

94.203

0.591
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.317

93.333

0.554