Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   P3T65_RS14015 Genome accession   NZ_CP120376
Coordinates   3047790..3048845 (+) Length   351 a.a.
NCBI ID   WP_038803401.1    Uniprot ID   A0A1B8TK19
Organism   Pseudomonas nitroreducens strain L4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3042790..3053845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T65_RS14000 (P3T65_14000) fdxA 3044147..3044470 (-) 324 WP_015476292.1 ferredoxin FdxA -
  P3T65_RS14005 (P3T65_14005) mutS 3044536..3047109 (-) 2574 WP_277369389.1 DNA mismatch repair protein MutS -
  P3T65_RS14010 (P3T65_14010) - 3047192..3047704 (+) 513 WP_024765300.1 CinA family protein -
  P3T65_RS14015 (P3T65_14015) recA 3047790..3048845 (+) 1056 WP_038803401.1 recombinase RecA Machinery gene
  P3T65_RS14020 (P3T65_14020) recX 3048851..3049315 (+) 465 WP_037016497.1 recombination regulator RecX -
  P3T65_RS14025 (P3T65_14025) - 3049368..3050441 (-) 1074 WP_024765298.1 LOG family protein -
  P3T65_RS14030 (P3T65_14030) - 3050606..3052027 (-) 1422 WP_065084300.1 MBL fold metallo-hydrolase RNA specificity domain-containing protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37515.85 Da        Isoelectric Point: 5.1505

>NTDB_id=805273 P3T65_RS14015 WP_038803401.1 3047790..3048845(+) (recA) [Pseudomonas nitroreducens strain L4]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
QHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQIMYGRGIYRTGEIIDLGVQLGLIEKSGAWYSYQGSKIGQGKANAAKFLEDNAEICNTLDK
AIREQLLTNQPAPTKAELAAAEAEAEAEADY

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=805273 P3T65_RS14015 WP_038803401.1 3047790..3048845(+) (recA) [Pseudomonas nitroreducens strain L4]
ATGGACGACAACAAGAAGCGCGCCCTGGCCGCGGCCCTGGGACAGATCGAACGCCAATTCGGCAAAGGCGCGGTCATGCG
CATGGGCGACCATGAGCGCCAGGCTATCCCCGCCATCTCCACCGGCTCGCTGGGTCTGGACATTGCGCTGGGCATCGGCG
GTCTGCCGAAGGGCCGTATCGTCGAGATCTACGGTCCGGAATCCTCGGGTAAGACCACCCTGACCCTGTCGGTCATCGCC
CAGGCCCAGAAAGCCGGCGCTACCTGCGCCTTCGTCGACGCCGAGCACGCGCTGGACCCGGATTACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTATCCCAGCCGGACACCGGCGAACAGGCGCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCGGCCCTGGTGCCCAAGGCCGAAATCGAAGGTGAGATGGGCGAT
CAACACGTCGGCCTGCAGGCCCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGCAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGCATGAAGATCGGTGTGATGTTCGGCAACCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACTCCTCCGTTCGTCTCGACATCCGCCGGACCGGCGCGGTGAAGGAAGGCGACGAGGTGGTCGGTAGTGAA
ACCCGCGTCAAGGTCGTGAAGAACAAGGTCGCCCCGCCGTTCCGTCAGGCCGAGTTCCAGATCATGTACGGCCGCGGCAT
CTACCGCACCGGCGAAATCATCGACCTGGGCGTGCAGCTGGGCCTGATCGAGAAGTCCGGCGCCTGGTACAGCTACCAGG
GCAGCAAGATTGGCCAAGGCAAGGCCAACGCCGCCAAGTTCCTGGAAGACAACGCCGAGATCTGCAACACCCTCGACAAG
GCCATCCGCGAACAACTGCTGACCAACCAGCCAGCGCCGACCAAGGCCGAACTCGCTGCGGCTGAGGCCGAAGCGGAAGC
TGAAGCTGATTATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B8TK19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

87.429

99.715

0.872
  recA Acinetobacter baylyi ADP1

72.857

99.715

0.726
  recA Vibrio cholerae strain A1552

72.543

98.575

0.715
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.543

98.575

0.715
  recA Glaesserella parasuis strain SC1401

70.809

98.575

0.698
  recA Acinetobacter baumannii D1279779

74.39

93.447

0.695
  recA Ralstonia pseudosolanacearum GMI1000

69.164

98.86

0.684
  recA Neisseria gonorrhoeae MS11

71.605

92.308

0.661
  recA Neisseria gonorrhoeae MS11

71.605

92.308

0.661
  recA Neisseria gonorrhoeae strain FA1090

71.605

92.308

0.661
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.443

93.162

0.61
  recA Streptococcus mutans UA159

58.807

100

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.976

95.157

0.59
  recA Helicobacter pylori strain NCTC11637

61.424

96.011

0.59
  recA Helicobacter pylori 26695

60.831

96.011

0.584
  recA Bacillus subtilis subsp. subtilis str. 168

63.043

91.738

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

60.748

91.453

0.556
  recA Streptococcus mitis NCTC 12261

59.816

92.877

0.556
  recA Streptococcus pneumoniae Rx1

59.509

92.877

0.553
  recA Streptococcus pneumoniae D39

59.509

92.877

0.553
  recA Streptococcus pneumoniae R6

59.509

92.877

0.553
  recA Streptococcus mitis SK321

59.509

92.877

0.553
  recA Streptococcus pneumoniae TIGR4

59.509

92.877

0.553
  recA Streptococcus pyogenes NZ131

59.692

92.593

0.553
  recA Lactococcus lactis subsp. cremoris KW2

56.656

92.023

0.521
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.556

92.308

0.513