Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PVE35_RS14115 Genome accession   NZ_CP120359
Coordinates   3079810..3080859 (-) Length   349 a.a.
NCBI ID   WP_268183187.1    Uniprot ID   -
Organism   Pseudomonas sp. AA-38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3074810..3085859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVE35_RS14090 rmf 3076648..3076863 (+) 216 WP_003244273.1 ribosome modulation factor -
  PVE35_RS14095 - 3076998..3078020 (-) 1023 WP_268183193.1 quinone-dependent dihydroorotate dehydrogenase -
  PVE35_RS14100 - 3078118..3078339 (-) 222 WP_268183192.1 DUF2835 domain-containing protein -
  PVE35_RS14105 - 3078466..3079341 (+) 876 WP_277372162.1 DUF6685 family protein -
  PVE35_RS14110 recX 3079338..3079805 (-) 468 WP_277372163.1 recombination regulator RecX -
  PVE35_RS14115 recA 3079810..3080859 (-) 1050 WP_268183187.1 recombinase RecA Machinery gene
  PVE35_RS14120 - 3080947..3081447 (-) 501 WP_268183185.1 CinA family protein -
  PVE35_RS14125 - 3081541..3082281 (-) 741 WP_277372164.1 TetR/AcrR family transcriptional regulator -
  PVE35_RS14130 mdeB 3082414..3085083 (+) 2670 WP_277372165.1 alpha-ketoglutarate dehydrogenase -
  PVE35_RS14135 - 3085130..3085765 (+) 636 WP_277372166.1 VOC family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37265.68 Da        Isoelectric Point: 5.3157

>NTDB_id=805195 PVE35_RS14115 WP_268183187.1 3079810..3080859(-) (recA) [Pseudomonas sp. AA-38]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKLGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
QHVGLQARLMSQALRKITGNIKTANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQQNLVEKSGAWYSYQGNKIGQGKANAAKYLEDNPAVAREIEG
LIREKLLVSSAPVKATAAAAEVEDAEVDF

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=805195 PVE35_RS14115 WP_268183187.1 3079810..3080859(-) (recA) [Pseudomonas sp. AA-38]
ATGGACGAGAACAAGAAGCGCGCCTTGGCGGCTGCCCTGGGCCAGATCGAGAAGCAGTTTGGCAAGGGCGCGGTGATGCG
CATGGGCGACCATGATCGCCAGGCCATTCCGGCCATTTCCACCGGCTCGCTGGGCCTGGACATTGCGCTGGGCATCGGTG
GCCTGCCCAAGGGCCGCATCGTCGAGATCTACGGCCCGGAGTCCTCGGGTAAGACCACCCTGACCCTGTCGGTGATCGCC
GAGGCGCAGAAACTCGGCGCCACCTGTGCCTTCGTCGATGCCGAGCACGCGCTCGATCCCGACTACGCCGGCAAGCTGGG
CGTGAATGTCGACGACCTGCTGGTGTCGCAGCCGGATACCGGCGAGCAGGCTCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCTGTCGACGTGATCATCGTCGACTCCGTGGCGGCCCTGGTGCCCAAGGCCGAGATCGAAGGCGAGATGGGCGAT
CAGCACGTCGGCCTGCAGGCCCGTCTGATGAGCCAGGCGCTGCGCAAGATCACCGGCAACATCAAGACCGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCTC
TGAAGTTCTACTCCTCGGTACGCCTGGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAGGTGGTGGGCAGCGAA
ACCCGCGTGAAGATCGTCAAGAACAAGGTGGCGCCGCCGTTCCGCCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGCAT
CTACCGTAACGGCGAGATCATCGACCTCGGCGTGCAGCAGAATCTGGTGGAGAAATCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGTCAGGGCAAGGCCAATGCCGCCAAGTACCTCGAGGACAACCCGGCCGTCGCCCGTGAGATCGAAGGC
CTGATCCGCGAGAAGCTGCTGGTCAGCAGCGCGCCGGTAAAAGCCACCGCTGCCGCCGCCGAGGTGGAAGACGCCGAAGT
CGACTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

90.778

99.427

0.903
  recA Acinetobacter baylyi ADP1

75.291

98.567

0.742
  recA Acinetobacter baumannii D1279779

74.277

99.14

0.736
  recA Vibrio cholerae strain A1552

74.618

93.696

0.699
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.618

93.696

0.699
  recA Glaesserella parasuis strain SC1401

69.253

99.713

0.691
  recA Ralstonia pseudosolanacearum GMI1000

72.948

94.269

0.688
  recA Neisseria gonorrhoeae MS11

71.296

92.837

0.662
  recA Neisseria gonorrhoeae MS11

71.296

92.837

0.662
  recA Neisseria gonorrhoeae strain FA1090

71.296

92.837

0.662
  recA Helicobacter pylori strain NCTC11637

64.22

93.696

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.22

93.696

0.602
  recA Helicobacter pylori 26695

63.609

93.696

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.275

95.702

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

91.977

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

59.394

94.556

0.562
  recA Streptococcus mutans UA159

59.077

93.123

0.55
  recA Streptococcus pyogenes NZ131

58.232

93.983

0.547
  recA Streptococcus mitis SK321

58.824

92.55

0.544
  recA Streptococcus mitis NCTC 12261

58.514

92.55

0.542
  recA Streptococcus pneumoniae Rx1

57.975

93.41

0.542
  recA Streptococcus pneumoniae D39

57.975

93.41

0.542
  recA Streptococcus pneumoniae R6

57.975

93.41

0.542
  recA Streptococcus pneumoniae TIGR4

57.975

93.41

0.542
  recA Lactococcus lactis subsp. cremoris KW2

56.656

92.55

0.524
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.183

93.983

0.519