Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   P0Y57_RS05070 Genome accession   NZ_CP120231
Coordinates   1278620..1279645 (+) Length   341 a.a.
NCBI ID   WP_153848162.1    Uniprot ID   -
Organism   MAG: Sphingobacterium sp. isolate MAG     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1273620..1284645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0Y57_RS05055 (P0Y57_05055) - 1275812..1277437 (+) 1626 WP_288065363.1 S8 family serine peptidase -
  P0Y57_RS05060 (P0Y57_05060) - 1277518..1277709 (+) 192 WP_153848161.1 hypothetical protein -
  P0Y57_RS05065 (P0Y57_05065) nth 1277875..1278552 (+) 678 WP_288065366.1 endonuclease III -
  P0Y57_RS05070 (P0Y57_05070) recA 1278620..1279645 (+) 1026 WP_153848162.1 recombinase RecA Machinery gene
  P0Y57_RS05075 (P0Y57_05075) - 1279837..1280604 (+) 768 WP_153848163.1 endonuclease/exonuclease/phosphatase family protein -
  P0Y57_RS05080 (P0Y57_05080) - 1280624..1281805 (+) 1182 WP_288065372.1 metallophosphoesterase -
  P0Y57_RS05085 (P0Y57_05085) pruA 1281866..1283503 (-) 1638 WP_153848165.1 L-glutamate gamma-semialdehyde dehydrogenase -
  P0Y57_RS05090 (P0Y57_05090) msrA 1283672..1284331 (-) 660 WP_288065376.1 peptide-methionine (S)-S-oxide reductase MsrA -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36744.19 Da        Isoelectric Point: 4.8057

>NTDB_id=804769 P0Y57_RS05070 WP_153848162.1 1278620..1279645(+) (recA) [MAG: Sphingobacterium sp. isolate MAG]
MSNTDKLKALQLTLDKLEKNFGKGSIMKLGDTAVEPIEAISTGSLGLDIALGIGGVPKGRIIEIYGPESSGKTTLATHIV
AEAQKKGGIAAIIDAEHAFDKYYAQKLGVDVENLLISQPDNGEQGLEIADNLIRSGAIDVIVIDSVAALVPKGEIEGEMG
DSKMGLQARLMSQALRKLTGTISKTNCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRTSQIKDSDEVSGN
RVKVKIVKNKVAPPFRIAEFDIIFGEGISKVGEIIDLGVEYGIIKKAGSWFSYGETKLGQGRDAVKALLFDNPDLMDELE
AKIRAEVTGEDPMLNIEENQD

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=804769 P0Y57_RS05070 WP_153848162.1 1278620..1279645(+) (recA) [MAG: Sphingobacterium sp. isolate MAG]
ATGAGCAACACAGATAAACTAAAAGCTTTACAGCTGACGTTAGATAAATTGGAAAAGAACTTTGGAAAAGGTTCAATTAT
GAAATTAGGGGATACTGCTGTTGAGCCGATCGAGGCTATTTCTACAGGATCTCTAGGCTTGGATATCGCCTTAGGAATTG
GCGGTGTACCAAAAGGCCGTATCATTGAAATATATGGACCTGAATCGTCAGGTAAAACTACCTTAGCAACTCACATTGTT
GCAGAGGCACAAAAAAAAGGCGGTATTGCAGCAATCATTGATGCTGAGCATGCTTTTGATAAATATTACGCTCAAAAATT
AGGCGTAGATGTAGAAAATTTATTGATTTCTCAACCAGATAATGGTGAGCAAGGTTTAGAAATTGCTGATAACCTAATCC
GTTCTGGTGCAATCGACGTTATTGTTATTGACTCCGTTGCGGCTTTGGTACCAAAAGGTGAGATCGAAGGCGAAATGGGT
GATTCTAAAATGGGCCTTCAAGCTCGTTTGATGTCTCAGGCTTTACGTAAACTGACCGGTACAATTTCAAAAACAAACTG
TTGTTGTATTTTCATCAACCAATTGCGTGAAAAAATTGGTGTGATGTTTGGCAACCCAGAAACAACAACTGGTGGTAATG
CATTAAAATTCTACGCTTCTGTACGTTTAGATATCCGTCGTACATCACAAATCAAAGATTCTGATGAAGTATCGGGTAAC
CGCGTAAAAGTGAAGATTGTAAAAAATAAAGTAGCCCCTCCTTTCCGCATCGCGGAATTTGATATCATCTTTGGTGAAGG
TATCTCTAAAGTAGGTGAAATCATTGATTTAGGTGTTGAATATGGTATCATCAAAAAGGCAGGCTCTTGGTTTAGCTATG
GTGAGACCAAACTAGGACAAGGTAGAGATGCCGTCAAAGCTTTATTATTCGACAATCCAGATTTAATGGATGAACTTGAA
GCTAAAATCCGCGCTGAAGTGACAGGAGAAGATCCAATGCTTAACATCGAGGAAAACCAAGACTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

70.997

97.067

0.689
  recA Ralstonia pseudosolanacearum GMI1000

69.085

92.962

0.642
  recA Neisseria gonorrhoeae strain FA1090

67.081

94.428

0.633
  recA Neisseria gonorrhoeae MS11

67.081

94.428

0.633
  recA Neisseria gonorrhoeae MS11

67.081

94.428

0.633
  recA Helicobacter pylori strain NCTC11637

65.031

95.601

0.622
  recA Acinetobacter baumannii D1279779

62.537

99.413

0.622
  recA Helicobacter pylori 26695

64.724

95.601

0.619
  recA Glaesserella parasuis strain SC1401

66.144

93.548

0.619
  recA Acinetobacter baylyi ADP1

65.015

94.721

0.616
  recA Bacillus subtilis subsp. subtilis str. 168

64.798

94.135

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.396

94.721

0.61
  recA Pseudomonas stutzeri DSM 10701

63.777

94.721

0.604
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.479

97.947

0.592
  recA Vibrio cholerae strain A1552

60.479

97.947

0.592
  recA Streptococcus mutans UA159

58.772

100

0.589
  recA Streptococcus mitis NCTC 12261

61.162

95.894

0.587
  recA Streptococcus pyogenes NZ131

61.42

95.015

0.584
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

95.308

0.584
  recA Streptococcus pneumoniae D39

61.043

95.601

0.584
  recA Streptococcus pneumoniae TIGR4

61.043

95.601

0.584
  recA Streptococcus pneumoniae Rx1

61.043

95.601

0.584
  recA Streptococcus pneumoniae R6

61.043

95.601

0.584
  recA Lactococcus lactis subsp. cremoris KW2

61.801

94.428

0.584
  recA Streptococcus mitis SK321

60.856

95.894

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.716

95.015

0.548