Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   P3T93_RS07695 Genome accession   NZ_CP119997
Coordinates   1551509..1552561 (-) Length   350 a.a.
NCBI ID   WP_323701655.1    Uniprot ID   -
Organism   Staphylococcus cohnii strain Dog166     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1546509..1557561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T93_RS07680 (P3T93_07685) - 1548199..1548990 (-) 792 WP_019468713.1 TIGR00282 family metallophosphoesterase -
  P3T93_RS07685 (P3T93_07690) - 1549157..1549372 (+) 216 WP_019468712.1 hypothetical protein -
  P3T93_RS07690 (P3T93_07695) rny 1549616..1551175 (-) 1560 WP_019468711.1 ribonuclease Y -
  P3T93_RS07695 (P3T93_07700) recA 1551509..1552561 (-) 1053 WP_323701655.1 recombinase RecA Machinery gene
  P3T93_RS07700 (P3T93_07705) - 1552733..1553878 (-) 1146 WP_323701656.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  P3T93_RS07705 (P3T93_07710) pgsA 1554108..1554686 (-) 579 WP_019468708.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  P3T93_RS07710 (P3T93_07715) - 1554739..1555131 (-) 393 WP_019468707.1 RodZ family helix-turn-helix domain-containing protein -
  P3T93_RS07715 (P3T93_07720) - 1555163..1555993 (-) 831 WP_019468706.1 DUF3388 domain-containing protein -
  P3T93_RS07720 (P3T93_07725) - 1556186..1556890 (-) 705 WP_019468705.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38040.15 Da        Isoelectric Point: 5.1162

>NTDB_id=801437 P3T93_RS07695 WP_323701655.1 1551509..1552561(-) (recA) [Staphylococcus cohnii strain Dog166]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNEARKVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGIAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDMMYGKGISKEGEIIDLGVENEIVNKSGAWYSYNGERMGQGKENVKLYLKENPKVKQEIDQ
KLREKLGIFDGDVDEKEEEAPATLFDEKDE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=801437 P3T93_RS07695 WP_323701655.1 1551509..1552561(-) (recA) [Staphylococcus cohnii strain Dog166]
TTGGATAATGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAAAAATCATTTGGTAAAGGTGCAGTAATGAA
ACTTGGTGATAATGAAGCACGCAAAGTTTCTAGTGTATCAAGTGGTTCAGTAACTCTAGATAACGCATTAGGGGTTGGTG
GTTACCCTAAAGGTAGAATTATAGAAATATACGGACCAGAAAGTTCCGGTAAAACAACTGTTGCATTACATGCCATAGCT
GAAGTACAAAAAAATGGTGGCATTGCTGCATTTATTGATGCTGAACATGCTTTAGACCCAGTTTATGCTGAAGCATTAGG
TGTTGATATTCAAAATTTATATTTGTCTCAACCAGATCATGGTGAACAAGGCTTAGAAATTGCTGAAGCATTTGTTAGAA
GTGGTGCGGTAGATATTGTTGTTGTCGACTCAGTAGCTGCGTTAACACCGAAAGCTGAAATTGAAGGTGAAATGGGCGAT
ACACATGTCGGTTTACAAGCGCGTTTAATGTCACAAGCACTACGTAAATTGTCTGGCGCTATTTCTAAATCAAATACAAC
TGCTGTATTTATAAATCAAATTCGTGAAAAAGTTGGTGTTATGTTTGGGAATCCTGAAACGACACCAGGTGGACGTGCAT
TGAAATTCTATAGTTCAGTGCGTTTAGAAGTTCGTCGTGCAGAACAGTTGAAACAAGGCCAAGAAATTGTTGGTAACAGA
ACAAAAATTAAAGTGGTAAAAAACAAAGTAGCTCCTCCATTTAGAGTGGCAGAAGTTGATATGATGTACGGTAAAGGCAT
CTCCAAAGAAGGAGAGATCATTGATCTTGGTGTAGAAAATGAAATCGTCAATAAATCGGGTGCTTGGTATTCTTACAATG
GTGAACGTATGGGTCAAGGTAAAGAAAACGTTAAATTATATTTAAAAGAAAATCCAAAAGTTAAACAAGAAATCGATCAA
AAATTACGAGAAAAACTTGGTATTTTCGATGGTGACGTTGATGAAAAAGAAGAAGAAGCACCTGCTACACTTTTTGATGA
AAAAGATGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.38

93.143

0.711
  recA Latilactobacillus sakei subsp. sakei 23K

69.208

97.429

0.674
  recA Streptococcus mutans UA159

63.714

100

0.637
  recA Streptococcus pneumoniae R6

65.103

97.429

0.634
  recA Streptococcus pneumoniae Rx1

65.103

97.429

0.634
  recA Streptococcus pneumoniae D39

65.103

97.429

0.634
  recA Streptococcus pneumoniae TIGR4

65.103

97.429

0.634
  recA Streptococcus pyogenes NZ131

67.477

94

0.634
  recA Neisseria gonorrhoeae MS11

63.873

98.857

0.631
  recA Neisseria gonorrhoeae strain FA1090

63.873

98.857

0.631
  recA Neisseria gonorrhoeae MS11

63.873

98.857

0.631
  recA Streptococcus mitis NCTC 12261

64.431

98

0.631
  recA Streptococcus mitis SK321

65.766

95.143

0.626
  recA Acinetobacter baylyi ADP1

63.848

98

0.626
  recA Lactococcus lactis subsp. cremoris KW2

65.861

94.571

0.623
  recA Acinetobacter baumannii D1279779

62.356

99.429

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.974

98

0.617
  recA Helicobacter pylori 26695

64.634

93.714

0.606
  recA Helicobacter pylori strain NCTC11637

64.329

93.714

0.603
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.804

93.143

0.594
  recA Vibrio cholerae strain A1552

63.804

93.143

0.594
  recA Ralstonia pseudosolanacearum GMI1000

66.134

89.429

0.591
  recA Pseudomonas stutzeri DSM 10701

62.577

93.143

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

94.571

0.577
  recA Glaesserella parasuis strain SC1401

61.491

92

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

91.429

0.551