Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   P0S91_RS16125 Genome accession   NZ_CP119968
Coordinates   3378557..3379624 (-) Length   355 a.a.
NCBI ID   WP_105218752.1    Uniprot ID   A0A6N8FUL0
Organism   Gloeocapsopsis dulcis strain AAB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3373557..3384624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0S91_RS16110 (P0S91_16065) - 3375711..3377288 (+) 1578 WP_105218755.1 helicase C-terminal domain-containing protein -
  P0S91_RS16115 (P0S91_16070) - 3377480..3377692 (+) 213 WP_105218754.1 DUF2839 domain-containing protein -
  P0S91_RS16120 (P0S91_16075) - 3378032..3378409 (+) 378 WP_105218753.1 DUF1815 family protein -
  P0S91_RS16125 (P0S91_16080) recA 3378557..3379624 (-) 1068 WP_105218752.1 recombinase RecA Machinery gene
  P0S91_RS16130 (P0S91_16085) xseA 3379898..3381127 (+) 1230 WP_105218751.1 exodeoxyribonuclease VII large subunit -
  P0S91_RS16135 (P0S91_16090) xseB 3381132..3381386 (+) 255 WP_105218750.1 exodeoxyribonuclease VII small subunit -
  P0S91_RS16140 (P0S91_16095) - 3381506..3382705 (-) 1200 WP_105218749.1 DNA double-strand break repair nuclease NurA -
  P0S91_RS16145 (P0S91_16100) - 3382856..3383641 (-) 786 WP_105218748.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37765.00 Da        Isoelectric Point: 4.8523

>NTDB_id=801283 P0S91_RS16125 WP_105218752.1 3378557..3379624(-) (recA) [Gloeocapsopsis dulcis strain AAB1]
MAIDTTDTSGKQKALNLVLNQIERSFGKGAIMRLGDATRMRVETISTGALTLDLALGGGLPKGRVIEVYGPESSGKTTVA
LHAVAEVQKNGGVAAFVDAEHALDPTYAAALGVDIANLLVSQPDTGEAALEIVDQLVRSAAVDIVVIDSVAALVPRAEIE
GEMGDAHVGLQARLMSQALRKITGNIGKSGCTVIFLNQLRQKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKKGTE
EFGNRVKVKVAKNKVAPPFRVAEFDIVFGKGVSTLGCVIDLAEETGVVVRKGAWYSYNGDNIAQGRDNAIKYLEENIELA
QQIQQIVRDKLEMGAVVSANSVGETEDEAELDADE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=801283 P0S91_RS16125 WP_105218752.1 3378557..3379624(-) (recA) [Gloeocapsopsis dulcis strain AAB1]
ATGGCTATTGATACAACTGATACATCCGGAAAGCAAAAAGCCCTGAACTTGGTGCTAAACCAAATTGAACGCAGCTTCGG
CAAAGGGGCAATCATGCGTCTTGGCGATGCCACTCGAATGCGGGTGGAAACAATTTCCACGGGCGCATTAACCCTAGACT
TAGCTTTGGGCGGTGGTTTACCTAAAGGGCGAGTTATCGAAGTTTATGGTCCAGAAAGTTCTGGTAAAACCACAGTAGCG
CTGCACGCAGTTGCAGAAGTGCAAAAGAATGGTGGTGTTGCTGCATTTGTTGATGCGGAACACGCCCTCGATCCTACCTA
CGCTGCTGCACTGGGAGTTGATATTGCCAATTTACTGGTTTCTCAACCCGATACAGGAGAAGCGGCTTTAGAAATTGTTG
ACCAGCTAGTCCGCTCGGCGGCTGTAGACATCGTCGTAATAGACTCAGTAGCGGCACTTGTCCCCCGTGCTGAAATTGAA
GGCGAGATGGGTGACGCGCATGTTGGTCTTCAAGCCCGTTTGATGAGCCAGGCGTTAAGGAAAATCACAGGTAATATTGG
TAAATCTGGCTGTACTGTCATATTTCTCAACCAGTTGCGCCAAAAGATCGGTGTTACTTATGGCAACCCCGAAACAACTA
CTGGTGGTAACGCACTAAAGTTTTATGCTTCAGTTCGACTCGACATTCGCCGGATTCAAACCTTGAAAAAAGGTACTGAA
GAGTTTGGTAATCGTGTCAAAGTTAAAGTTGCTAAAAACAAAGTTGCACCACCTTTTCGAGTGGCAGAATTTGATATTGT
GTTTGGCAAAGGTGTTTCAACTCTAGGCTGTGTTATCGACCTGGCAGAGGAAACTGGCGTTGTTGTTCGTAAGGGAGCTT
GGTATAGCTACAACGGCGATAATATTGCTCAAGGTCGTGATAATGCCATCAAATATCTAGAAGAAAATATTGAACTAGCA
CAGCAAATTCAGCAGATAGTTCGAGACAAACTGGAAATGGGAGCAGTTGTTTCTGCTAATTCAGTTGGAGAAACTGAAGA
TGAAGCAGAATTGGATGCTGACGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(13-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N8FUL0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

63.768

97.183

0.62
  recA Ralstonia pseudosolanacearum GMI1000

66.667

92.113

0.614
  recA Acinetobacter baylyi ADP1

63.743

96.338

0.614
  recA Acinetobacter baumannii D1279779

63.265

96.62

0.611
  recA Neisseria gonorrhoeae MS11

63.75

90.141

0.575
  recA Neisseria gonorrhoeae strain FA1090

63.75

90.141

0.575
  recA Neisseria gonorrhoeae MS11

63.75

90.141

0.575
  recA Helicobacter pylori strain NCTC11637

61.261

93.803

0.575
  recA Helicobacter pylori 26695

61.261

93.803

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

63.043

90.704

0.572
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.422

90.704

0.566
  recA Vibrio cholerae strain A1552

62.422

90.704

0.566
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.48

96.338

0.563
  recA Streptococcus pneumoniae D39

56.609

98.028

0.555
  recA Streptococcus pneumoniae R6

56.609

98.028

0.555
  recA Streptococcus pneumoniae TIGR4

56.609

98.028

0.555
  recA Streptococcus pneumoniae Rx1

56.609

98.028

0.555
  recA Streptococcus mutans UA159

55.84

98.873

0.552
  recA Glaesserella parasuis strain SC1401

60.559

90.704

0.549
  recA Latilactobacillus sakei subsp. sakei 23K

60.815

89.859

0.546
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.612

94.366

0.544
  recA Streptococcus mitis NCTC 12261

59.259

91.268

0.541
  recA Streptococcus mitis SK321

59.259

91.268

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.38

94.93

0.535
  recA Streptococcus pyogenes NZ131

57.975

91.831

0.532
  recA Lactococcus lactis subsp. cremoris KW2

57.895

90.986

0.527