Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CupriaWKF_RS02760 Genome accession   NZ_CP119572
Coordinates   575799..576857 (+) Length   352 a.a.
NCBI ID   WP_276099518.1    Uniprot ID   -
Organism   Cupriavidus sp. WKF15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 570799..581857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CupriaWKF_RS02740 (CupriaWKF_02740) - 570928..572628 (-) 1701 WP_276099514.1 MFS transporter -
  CupriaWKF_RS02745 (CupriaWKF_02745) - 572869..573213 (-) 345 WP_276099515.1 DUF4212 domain-containing protein -
  CupriaWKF_RS02750 (CupriaWKF_02750) - 573210..574763 (-) 1554 WP_276099516.1 sensor histidine kinase -
  CupriaWKF_RS02755 (CupriaWKF_02755) - 574834..575523 (-) 690 WP_276099517.1 response regulator transcription factor -
  CupriaWKF_RS02760 (CupriaWKF_02760) recA 575799..576857 (+) 1059 WP_276099518.1 recombinase RecA Machinery gene
  CupriaWKF_RS02765 (CupriaWKF_02765) recX 576946..577416 (+) 471 WP_276099519.1 recombination regulator RecX -
  CupriaWKF_RS02770 (CupriaWKF_02770) - 577700..578374 (+) 675 WP_276099520.1 DUF2889 domain-containing protein -
  CupriaWKF_RS02775 (CupriaWKF_02775) sucC 578462..579631 (+) 1170 WP_276099521.1 ADP-forming succinate--CoA ligase subunit beta -
  CupriaWKF_RS02780 (CupriaWKF_02780) sucD 579719..580600 (+) 882 WP_276099522.1 succinate--CoA ligase subunit alpha -
  CupriaWKF_RS02785 (CupriaWKF_02785) - 580871..581566 (+) 696 WP_276099523.1 TerC family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37532.06 Da        Isoelectric Point: 4.9528

>NTDB_id=799693 CupriaWKF_RS02760 WP_276099518.1 575799..576857(+) (recA) [Cupriavidus sp. WKF15]
MDDKKAGAGLSAEKQKALAAALSQIEKQFGKGSIMRMGDGEVEKDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSG
KTTLTLQVVAEMQKLGGTCAFIDAEHALDVNYASKLGVDVGELLISQPDTGEQALEITDALVRSGSIDLIVIDSVAALVP
KAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSI
KKGDEVIGNETKVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKSGAWYSYNGDKIGQGKDNAREFLRE
NPDIAQEIENKVRATLGVAPINAVPAAEVVED

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=799693 CupriaWKF_RS02760 WP_276099518.1 575799..576857(+) (recA) [Cupriavidus sp. WKF15]
ATGGACGACAAGAAGGCAGGTGCCGGCCTGAGCGCCGAGAAGCAGAAGGCGCTTGCCGCCGCGCTCTCGCAGATCGAGAA
GCAGTTCGGCAAGGGCTCGATCATGCGCATGGGCGATGGCGAGGTCGAGAAGGATATCCAGGTGGTGTCCACCGGTTCCC
TCGGCCTGGACATCGCGCTCGGCGTGGGCGGCCTGCCGCGCGGCCGCGTGGTCGAGATCTACGGTCCCGAATCTTCCGGC
AAGACCACGCTCACGCTGCAGGTCGTGGCCGAGATGCAGAAGCTCGGCGGTACCTGCGCGTTTATCGATGCCGAGCACGC
CCTTGACGTCAACTATGCCTCGAAGCTGGGCGTGGACGTCGGCGAGCTGCTGATCTCGCAGCCGGACACCGGCGAGCAGG
CGCTTGAAATCACCGACGCACTGGTGCGCTCGGGCTCGATCGACCTGATCGTCATCGACTCGGTGGCCGCGCTGGTGCCG
AAGGCCGAAATCGAAGGCGAAATGGGCGACTCGCTGCCCGGCCTGCAGGCTCGCCTGATGAGCCAGGCGCTGCGCAAGCT
GACCGGTACCATCAAGCGCACGAACTGCCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTT
CGCCGGAAACCACCACCGGTGGCAACGCGCTGAAGTTCTACGCATCTGTGCGCCTGGATATCCGCCGCATCGGCTCGATC
AAGAAGGGCGACGAAGTGATCGGCAACGAGACCAAGGTCAAGGTGGTCAAGAACAAGGTGTCGCCGCCGTTCCGCGAGGC
CTTCTTCGACATCCTCTACGGCCAGGGCATTTCGCGCCAGGGCGAGATCATCGACCTGGGCGTGGATGCCAAGATCGTCG
AGAAGTCGGGTGCGTGGTACAGCTACAACGGCGACAAGATCGGCCAGGGCAAGGACAATGCGCGCGAGTTCCTGCGCGAG
AACCCGGACATCGCCCAGGAAATCGAGAACAAGGTCCGCGCCACGCTGGGCGTGGCGCCGATCAACGCCGTTCCGGCGGC
GGAGGTCGTGGAAGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

86.932

100

0.869
  recA Pseudomonas stutzeri DSM 10701

73.043

98.011

0.716
  recA Neisseria gonorrhoeae MS11

75.076

93.466

0.702
  recA Neisseria gonorrhoeae MS11

75.076

93.466

0.702
  recA Neisseria gonorrhoeae strain FA1090

75.076

93.466

0.702
  recA Acinetobacter baylyi ADP1

74.613

91.761

0.685
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.477

92.898

0.673
  recA Acinetobacter baumannii D1279779

72.477

92.898

0.673
  recA Vibrio cholerae strain A1552

72.477

92.898

0.673
  recA Glaesserella parasuis strain SC1401

70.958

94.886

0.673
  recA Helicobacter pylori 26695

63.188

98.011

0.619
  recA Helicobacter pylori strain NCTC11637

62.899

98.011

0.616
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.35

93.466

0.611
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.031

92.614

0.602
  recA Bacillus subtilis subsp. subtilis str. 168

64.22

92.898

0.597
  recA Latilactobacillus sakei subsp. sakei 23K

62.13

96.023

0.597
  recA Streptococcus mitis SK321

59.366

98.58

0.585
  recA Streptococcus mutans UA159

61.515

93.75

0.577
  recA Lactococcus lactis subsp. cremoris KW2

61.329

94.034

0.577
  recA Streptococcus pneumoniae TIGR4

60.661

94.602

0.574
  recA Streptococcus mitis NCTC 12261

60.661

94.602

0.574
  recA Streptococcus pneumoniae Rx1

60.661

94.602

0.574
  recA Streptococcus pneumoniae D39

60.661

94.602

0.574
  recA Streptococcus pneumoniae R6

60.661

94.602

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

92.33

0.568
  recA Streptococcus pyogenes NZ131

60.182

93.466

0.562