Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   P2E04_RS04650 Genome accession   NZ_CP119540
Coordinates   1089389..1090456 (+) Length   355 a.a.
NCBI ID   WP_154625109.1    Uniprot ID   -
Organism   Providencia stuartii strain CAVP496     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1084389..1095456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2E04_RS04630 (P2E04_04630) aroL 1084809..1085309 (+) 501 WP_154625105.1 shikimate kinase AroL -
  P2E04_RS04635 (P2E04_04635) aas 1085418..1087562 (+) 2145 WP_276123026.1 bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase -
  P2E04_RS04640 (P2E04_04640) lplT 1087567..1088757 (+) 1191 WP_154625107.1 lysophospholipid transporter LplT -
  P2E04_RS04645 (P2E04_04645) pncC 1088779..1089294 (+) 516 WP_163860771.1 nicotinamide-nucleotide amidase -
  P2E04_RS04650 (P2E04_04650) recA 1089389..1090456 (+) 1068 WP_154625109.1 recombinase RecA Machinery gene
  P2E04_RS04655 (P2E04_04655) alaS 1090904..1093531 (+) 2628 WP_250000060.1 alanine--tRNA ligase -
  P2E04_RS04660 (P2E04_04660) csrA 1093758..1093943 (+) 186 WP_004264815.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38198.57 Da        Isoelectric Point: 4.8949

>NTDB_id=799577 P2E04_RS04650 WP_154625109.1 1089389..1090456(+) (recA) [Providencia stuartii strain CAVP496]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDVALGAGGLPLGRIVEIYGPESSGKTTLTLQV
IAAAQRSGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGEEIVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINTYGELIDLGVKHKLIEKAGAWYSYNGDKIGQGKANATIYLKEHPEAAEEI
DKKLREMLLTHTGEFSSAATDYISEAEENESPEEF

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=799577 P2E04_RS04650 WP_154625109.1 1089389..1090456(+) (recA) [Providencia stuartii strain CAVP496]
ATGGCTATCGATGAAAACAAACAAAAAGCATTAGCAGCAGCGCTAGGTCAAATTGAAAAGCAATTTGGTAAAGGCTCTAT
CATGCGTCTTGGCGAAGATCGCTCAATGGATGTTGAAACTATCTCAACGGGTTCTTTATCTCTTGATGTCGCTTTAGGTG
CTGGTGGTCTGCCGCTGGGGCGTATTGTTGAAATCTATGGGCCTGAATCTTCTGGTAAAACAACACTGACACTGCAAGTT
ATTGCAGCCGCACAACGCAGTGGTAAAACATGTGCATTTATCGATGCTGAACATGCTCTCGACCCTATTTATGCAAAAAA
ATTAGGCGTTGATATTGATAACCTGCTGTGTTCTCAGCCTGATACCGGTGAGCAAGCACTGGAAATCTGTGATGCGTTGA
CGCGCTCAGGGGCTGTTGATGTCATCATTGTTGACTCCGTTGCAGCATTAACACCAAAAGCTGAAATTGAAGGTGAAATT
GGTGACTCTCATATGGGCTTAGCTGCTCGTATGATGAGCCAAGCAATGCGTAAATTAGCGGGTAACTTGAAAAACTCAAA
TACGCTGTTGATCTTCATTAACCAAATTCGTATGAAGATTGGTGTTATGTTTGGTAACCCTGAAACGACAACGGGCGGTA
ATGCTCTCAAATTCTATGCTTCCGTACGTTTAGATATTCGCCGTATTGGTGCTGTGAAAAATGGTGAAGAGATTGTTGGT
AGCGAAACGCGTGTTAAAGTCGTTAAAAACAAAGTCGCTGCACCATTTAAACAAGCTGAATTCCAAATCCTGTACGGTGA
AGGGATTAACACCTACGGTGAATTAATTGATTTAGGTGTTAAGCATAAATTGATTGAAAAAGCCGGTGCTTGGTATAGCT
ATAACGGTGATAAAATTGGTCAAGGGAAAGCGAATGCAACAATATATCTGAAAGAGCACCCTGAAGCGGCCGAAGAAATT
GATAAAAAACTGCGTGAAATGCTACTAACTCACACTGGTGAATTTAGCAGTGCAGCCACTGATTACATCAGTGAAGCCGA
AGAAAATGAATCGCCTGAAGAATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.726

100

0.814
  recA Vibrio cholerae strain A1552

80.726

100

0.814
  recA Pseudomonas stutzeri DSM 10701

75.152

92.958

0.699
  recA Acinetobacter baumannii D1279779

70.37

98.873

0.696
  recA Acinetobacter baylyi ADP1

71.726

94.648

0.679
  recA Glaesserella parasuis strain SC1401

68.376

98.873

0.676
  recA Neisseria gonorrhoeae MS11

65.634

100

0.656
  recA Neisseria gonorrhoeae MS11

65.634

100

0.656
  recA Neisseria gonorrhoeae strain FA1090

65.634

100

0.656
  recA Ralstonia pseudosolanacearum GMI1000

67.771

93.521

0.634
  recA Helicobacter pylori strain NCTC11637

63.609

92.113

0.586
  recA Helicobacter pylori 26695

63.303

92.113

0.583
  recA Streptococcus pneumoniae D39

63.158

90.986

0.575
  recA Streptococcus pneumoniae TIGR4

63.158

90.986

0.575
  recA Streptococcus pneumoniae R6

63.158

90.986

0.575
  recA Streptococcus pneumoniae Rx1

63.158

90.986

0.575
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.08

92.113

0.572
  recA Streptococcus mitis NCTC 12261

62.229

90.986

0.566
  recA Streptococcus mitis SK321

62.229

90.986

0.566
  recA Streptococcus pyogenes NZ131

61.538

91.549

0.563
  recA Streptococcus mutans UA159

61.538

91.549

0.563
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

91.549

0.561
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

90.423

0.561
  recA Lactococcus lactis subsp. cremoris KW2

61.61

90.986

0.561
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

93.521

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.125

90.423

0.544