Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   P0M04_RS11720 Genome accession   NZ_CP119520
Coordinates   2632729..2633808 (+) Length   359 a.a.
NCBI ID   WP_259450653.1    Uniprot ID   -
Organism   Telluria mixta strain ACM 1762     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2627729..2638808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0M04_RS11700 (P0M04_11710) - 2627912..2629975 (-) 2064 WP_259450649.1 sodium:solute symporter family protein -
  P0M04_RS11705 (P0M04_11715) - 2629972..2630283 (-) 312 WP_259450650.1 DUF4212 domain-containing protein -
  P0M04_RS11710 (P0M04_11720) - 2630255..2631820 (-) 1566 WP_259450651.1 sensor histidine kinase -
  P0M04_RS11715 (P0M04_11725) - 2631817..2632539 (-) 723 WP_259450652.1 response regulator transcription factor -
  P0M04_RS11720 (P0M04_11730) recA 2632729..2633808 (+) 1080 WP_259450653.1 recombinase RecA Machinery gene
  P0M04_RS11725 (P0M04_11735) recX 2633818..2634276 (+) 459 WP_259450654.1 recombination regulator RecX -
  P0M04_RS11730 (P0M04_11740) - 2634541..2635098 (+) 558 WP_259450655.1 DUF2889 domain-containing protein -
  P0M04_RS11735 (P0M04_11745) sucC 2635181..2636350 (+) 1170 WP_259450656.1 ADP-forming succinate--CoA ligase subunit beta -
  P0M04_RS11740 (P0M04_11750) sucD 2636368..2637249 (+) 882 WP_056124704.1 succinate--CoA ligase subunit alpha -
  P0M04_RS11745 (P0M04_11755) - 2637553..2638017 (+) 465 WP_281042407.1 pilin -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38253.66 Da        Isoelectric Point: 5.1832

>NTDB_id=799423 P0M04_RS11720 WP_259450653.1 2632729..2633808(+) (recA) [Telluria mixta strain ACM 1762]
MDDKKSAVNAAEKGKALAAALAQIEKQFGKGSVMRMDTNAPVEEVQTVSTGSLGLDIALGVGGLPRGRIVEIYGPESSGK
TTLTLQTIAQMQKLGGTCAFIDAEHALDVTYAQKLGIKLDELLISQPDTGEQALEITDALVRSGSVDMVVIDSVAALTPR
AEIEGDMGDSLPGLQARLMSQALRKLTASINRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSIK
TGDEVIGNETKVKVVKNKIAPPFKEAHFDILYGEGTSREGEIIDLGVDNKIVEKSGSWYSYGGERIGQGKDNARIFLRER
PALAREIENKVRAALGVRELPPAPAGDGAAQLASVGDDE

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=799423 P0M04_RS11720 WP_259450653.1 2632729..2633808(+) (recA) [Telluria mixta strain ACM 1762]
ATGGACGACAAAAAATCCGCAGTAAATGCAGCCGAGAAGGGCAAGGCGCTGGCAGCAGCCCTCGCGCAGATCGAAAAGCA
ATTCGGTAAAGGCTCGGTGATGCGCATGGATACCAATGCGCCCGTCGAGGAAGTACAAACCGTCTCGACCGGCTCGCTGG
GCCTGGACATCGCACTCGGCGTCGGAGGCCTGCCGCGTGGCCGTATCGTCGAGATCTATGGTCCGGAATCGTCGGGCAAG
ACGACGCTGACCCTGCAGACCATTGCCCAGATGCAGAAGCTGGGTGGCACCTGCGCGTTCATCGACGCCGAGCACGCGCT
GGACGTGACCTATGCGCAAAAGCTGGGCATCAAGCTGGACGAGCTGCTGATCTCGCAGCCGGACACGGGTGAACAGGCGC
TGGAAATCACGGACGCCCTCGTGCGTTCGGGCAGTGTCGACATGGTGGTCATCGACTCGGTGGCGGCACTGACGCCGCGC
GCCGAGATCGAAGGCGACATGGGCGACTCCCTGCCGGGCCTGCAAGCCCGCCTGATGTCGCAGGCGCTGCGCAAGCTGAC
CGCATCGATCAACCGTACGAACACCCTGGTGATCTTCATTAACCAGATCCGTATGAAGATCGGCGTCATGTTCGGCAGCC
CGGAAACGACGACCGGCGGTAACGCGCTGAAGTTCTACGCCTCCGTGCGTCTGGACATCCGCCGTACCGGCTCGATCAAG
ACCGGCGACGAGGTGATCGGTAACGAAACCAAGGTCAAGGTTGTCAAGAACAAGATCGCGCCCCCGTTCAAGGAAGCGCA
CTTCGACATCCTGTACGGCGAAGGCACGTCGCGCGAAGGCGAGATCATTGACCTGGGCGTGGACAACAAGATCGTCGAGA
AGTCGGGTTCGTGGTACAGCTACGGTGGCGAGCGCATCGGCCAGGGCAAGGACAATGCCCGTATCTTCTTGAGGGAGCGT
CCGGCACTGGCACGCGAAATCGAGAACAAGGTCCGCGCCGCCCTCGGCGTGCGCGAACTGCCGCCGGCCCCGGCCGGTGA
CGGTGCCGCCCAGCTGGCATCCGTCGGCGACGACGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.333

93.593

0.78
  recA Neisseria gonorrhoeae MS11

73.926

90.808

0.671
  recA Neisseria gonorrhoeae strain FA1090

73.926

90.808

0.671
  recA Neisseria gonorrhoeae MS11

73.926

90.808

0.671
  recA Acinetobacter baylyi ADP1

70.149

93.315

0.655
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.517

89.972

0.643
  recA Vibrio cholerae strain A1552

71.517

89.972

0.643
  recA Pseudomonas stutzeri DSM 10701

71.517

89.972

0.643
  recA Glaesserella parasuis strain SC1401

70.122

91.365

0.641
  recA Acinetobacter baumannii D1279779

71.207

89.972

0.641
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.957

91.643

0.604
  recA Streptococcus mitis NCTC 12261

59.229

100

0.599
  recA Streptococcus mitis SK321

59.116

100

0.596
  recA Helicobacter pylori 26695

62.722

94.15

0.591
  recA Helicobacter pylori strain NCTC11637

62.426

94.15

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

64.22

91.086

0.585
  recA Streptococcus mutans UA159

62.952

92.479

0.582
  recA Streptococcus pyogenes NZ131

63.222

91.643

0.579
  recA Latilactobacillus sakei subsp. sakei 23K

63.03

91.922

0.579
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.538

94.15

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.11

91.365

0.577
  recA Streptococcus pneumoniae D39

62.538

92.201

0.577
  recA Streptococcus pneumoniae TIGR4

62.538

92.201

0.577
  recA Streptococcus pneumoniae R6

62.538

92.201

0.577
  recA Streptococcus pneumoniae Rx1

62.538

92.201

0.577
  recA Lactococcus lactis subsp. cremoris KW2

60.725

92.201

0.56