Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PTW35_RS02640 Genome accession   NZ_CP119423
Coordinates   519741..520793 (+) Length   350 a.a.
NCBI ID   WP_281026436.1    Uniprot ID   -
Organism   Photobacterium sp. DA100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 514741..525793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTW35_RS02625 (PTW35_02625) rpoS 515238..516230 (+) 993 WP_281026433.1 RNA polymerase sigma factor RpoS -
  PTW35_RS02630 (PTW35_02630) mutS 516328..518898 (-) 2571 WP_281026434.1 DNA mismatch repair protein MutS -
  PTW35_RS02635 (PTW35_02635) pncC 519131..519607 (+) 477 WP_281026435.1 nicotinamide-nucleotide amidase -
  PTW35_RS02640 (PTW35_02640) recA 519741..520793 (+) 1053 WP_281026436.1 recombinase RecA Machinery gene
  PTW35_RS02645 (PTW35_02645) recX 520882..521343 (+) 462 WP_281026437.1 recombination regulator RecX -
  PTW35_RS02650 (PTW35_02650) alaS 521622..524246 (+) 2625 WP_281026438.1 alanine--tRNA ligase -
  PTW35_RS02655 (PTW35_02655) - 524263..525441 (+) 1179 WP_281026439.1 aspartate kinase -
  PTW35_RS02660 (PTW35_02660) csrA 525527..525724 (+) 198 WP_036818084.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37654.99 Da        Isoelectric Point: 4.8157

>NTDB_id=799187 PTW35_RS02640 WP_281026436.1 519741..520793(+) (recA) [Photobacterium sp. DA100]
MDDNKQKALAAALGQIEKQFGKGSIMKLGDNRTMDVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIA
AAQRQGKTCAFIDAEHALDPIYARKLGVDIDQLLVSQPDTGEQALEIADALARSGAVDILVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKITGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKQAETQILYGKGFNRYGELIDLGVKNKLVEKAGAWYSYQGDKIGQGKANACKYIEENSHIAEELEA
KLRELLLAPAALEEAAAEAQTEEDAEDQAF

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=799187 PTW35_RS02640 WP_281026436.1 519741..520793(+) (recA) [Photobacterium sp. DA100]
ATGGACGACAACAAGCAGAAGGCACTCGCCGCCGCGTTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCGATCATGAA
GTTGGGCGACAACCGCACTATGGATGTCGAAACCGTGTCTACCGGTTCTCTGTCTCTCGATATCGCCTTGGGTGCTGGTG
GTCTGCCTATGGGCCGTATCGTTGAAATCTACGGTCCCGAATCTTCAGGTAAAACCACGCTTACGCTAGAAGTTATCGCG
GCTGCTCAGCGTCAGGGCAAAACCTGTGCCTTCATCGATGCAGAGCACGCGCTTGACCCTATCTATGCCCGCAAGCTGGG
TGTTGATATCGACCAGCTCTTGGTTTCCCAGCCGGACACCGGTGAGCAGGCGTTGGAAATTGCCGATGCCCTAGCACGCT
CTGGCGCGGTAGATATTCTGGTTGTCGATTCCGTTGCAGCTCTGACGCCTAAGGCTGAAATCGAAGGTGAAATGGGTGAC
TCGCACATGGGTCTGCAGGCGCGTATGTTGTCTCAGGCGATGCGTAAGATCACCGGTAACCTGAAGCAGTCTAACTGTAT
GTGTATCTTCATTAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGTAACCCAGAGACTACCACCGGTGGTAACGCAC
TGAAGTTCTACGCGTCTGTTCGCCTTGATATCCGTCGTACTGGCGCGATCAAAGAAGGTGACGAGGTTGTCGGTAACGAA
ACCCGCATCAAGGTTGTGAAGAACAAGATCGCGGCACCGTTCAAGCAGGCGGAAACCCAGATCCTTTACGGCAAGGGCTT
CAACCGCTATGGCGAGCTTATCGACCTTGGCGTGAAGAATAAGCTGGTTGAGAAAGCCGGTGCTTGGTACAGCTACCAGG
GCGACAAGATCGGCCAGGGCAAGGCTAATGCCTGTAAGTACATCGAGGAAAACAGCCACATTGCCGAAGAGCTGGAAGCG
AAACTGCGTGAACTTCTGCTAGCTCCAGCTGCCCTGGAAGAGGCGGCAGCAGAAGCTCAGACAGAAGAAGATGCAGAAGA
TCAGGCATTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

85.838

98.857

0.849
  recA Vibrio cholerae O1 biovar El Tor strain E7946

85.838

98.857

0.849
  recA Acinetobacter baylyi ADP1

74.277

98.857

0.734
  recA Pseudomonas stutzeri DSM 10701

73.699

98.857

0.729
  recA Acinetobacter baumannii D1279779

73.699

98.857

0.729
  recA Glaesserella parasuis strain SC1401

67.147

99.143

0.666
  recA Neisseria gonorrhoeae MS11

68.405

93.143

0.637
  recA Neisseria gonorrhoeae MS11

68.405

93.143

0.637
  recA Neisseria gonorrhoeae strain FA1090

68.405

93.143

0.637
  recA Ralstonia pseudosolanacearum GMI1000

71.704

88.857

0.637
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.862

95.143

0.589
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

91.714

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.231

92.857

0.569
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.382

91.143

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

61.371

91.714

0.563
  recA Helicobacter pylori strain NCTC11637

60.615

92.857

0.563
  recA Helicobacter pylori 26695

60.308

92.857

0.56
  recA Streptococcus pneumoniae R6

60.681

92.286

0.56
  recA Streptococcus pneumoniae TIGR4

60.681

92.286

0.56
  recA Streptococcus pneumoniae Rx1

60.681

92.286

0.56
  recA Streptococcus pneumoniae D39

60.681

92.286

0.56
  recA Streptococcus mitis NCTC 12261

60.372

92.286

0.557
  recA Streptococcus mitis SK321

60.062

92.286

0.554
  recA Streptococcus pyogenes NZ131

59.692

92.857

0.554
  recA Streptococcus mutans UA159

59.692

92.857

0.554
  recA Lactococcus lactis subsp. cremoris KW2

58.514

92.286

0.54