Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PY254_RS14085 Genome accession   NZ_CP119392
Coordinates   3162012..3163049 (-) Length   345 a.a.
NCBI ID   WP_281012670.1    Uniprot ID   -
Organism   Rhodanobacter sp. AS-Z3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3157012..3168049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY254_RS14070 (PY254_14070) csrA 3158228..3158431 (-) 204 WP_281012667.1 carbon storage regulator CsrA -
  PY254_RS14075 (PY254_14075) alaS 3158701..3161328 (-) 2628 WP_281012668.1 alanine--tRNA ligase -
  PY254_RS14080 (PY254_14080) - 3161413..3161979 (-) 567 WP_281012669.1 regulatory protein RecX -
  PY254_RS14085 (PY254_14085) recA 3162012..3163049 (-) 1038 WP_281012670.1 recombinase RecA Machinery gene
  PY254_RS14090 (PY254_14090) - 3163196..3163705 (-) 510 WP_281012671.1 CinA family protein -
  PY254_RS14095 (PY254_14095) mutS 3163795..3166371 (+) 2577 WP_281012672.1 DNA mismatch repair protein MutS -
  PY254_RS14100 (PY254_14100) - 3166488..3167672 (-) 1185 WP_281012673.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37039.39 Da        Isoelectric Point: 5.5781

>NTDB_id=798797 PY254_RS14085 WP_281012670.1 3162012..3163049(-) (recA) [Rhodanobacter sp. AS-Z3]
MDDNKRKALTSALGQIEKQFGKGAIMRMGDRVNEAIETISTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTMTLQAIA
SCQRAGGTAAFIDAEHALDPTYAEKLGVKVDDLLVSQPDTGEQALEIADMLVRSGAVDMVVVDSVAALTPKAEIEGEMGD
SHVGLHARLMSQALRKLTANIKKSGTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKKGDEIIGSE
TRVKVVKNKVAPPFRQTEFEILYGEGTSREGEIIELGVRENLIDKSGAWYSYKGDRIGQGKENVRQFLRDNPAIANEVDT
ELRARLLVPVGKPAAAAAEETLEEA

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=798797 PY254_RS14085 WP_281012670.1 3162012..3163049(-) (recA) [Rhodanobacter sp. AS-Z3]
ATGGATGACAATAAGCGCAAAGCGCTCACTTCTGCGCTCGGCCAGATTGAAAAGCAGTTTGGCAAGGGTGCCATCATGCG
CATGGGTGATCGCGTCAATGAGGCGATCGAGACCATCTCCACCGGTTCGCTGGGGCTGGATATCGCGCTCGGTGTCGGCG
GTTTGCCGCGCGGACGCGTGGTTGAGATCTATGGCCCGGAGTCGTCCGGCAAAACCACCATGACGCTGCAGGCGATTGCC
AGCTGCCAGCGTGCAGGTGGCACTGCCGCGTTTATCGATGCCGAGCACGCGCTCGACCCGACCTACGCCGAGAAACTGGG
CGTCAAGGTCGATGACCTGCTGGTCTCGCAGCCGGATACCGGCGAGCAGGCACTGGAAATCGCCGACATGCTGGTGCGCT
CCGGTGCGGTGGACATGGTCGTGGTCGACTCGGTCGCGGCGTTGACCCCGAAGGCGGAAATCGAAGGCGAAATGGGCGAC
TCCCACGTCGGCCTGCACGCACGCCTGATGAGCCAGGCGCTGCGCAAGCTCACCGCCAACATCAAGAAGTCCGGCACCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAGACCACCACCGGCGGCAACGCGT
TGAAGTTCTATGCCTCGGTGCGTCTGGACATTCGCCGCATTGGTGCGGTCAAGAAAGGCGATGAGATCATCGGCTCGGAA
ACCCGTGTGAAGGTGGTCAAGAACAAGGTGGCGCCGCCATTCCGCCAGACCGAATTCGAAATTTTGTACGGCGAAGGTAC
CTCGCGCGAAGGCGAGATCATCGAGCTGGGCGTGCGTGAAAACCTGATCGACAAGTCAGGCGCCTGGTATAGCTACAAGG
GTGACCGTATCGGTCAGGGCAAGGAGAACGTGCGCCAGTTCCTGCGCGACAATCCCGCCATTGCCAACGAGGTGGATACC
GAGCTGCGTGCGCGCCTGCTGGTTCCGGTCGGCAAGCCTGCGGCAGCGGCCGCCGAAGAGACGCTTGAGGAAGCGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

74.203

100

0.742
  recA Acinetobacter baylyi ADP1

72.965

99.71

0.728
  recA Ralstonia pseudosolanacearum GMI1000

70.621

100

0.725
  recA Neisseria gonorrhoeae strain FA1090

74.154

94.203

0.699
  recA Neisseria gonorrhoeae MS11

74.154

94.203

0.699
  recA Neisseria gonorrhoeae MS11

74.154

94.203

0.699
  recA Acinetobacter baumannii D1279779

73.089

94.783

0.693
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.429

95.362

0.681
  recA Vibrio cholerae strain A1552

71.429

95.362

0.681
  recA Glaesserella parasuis strain SC1401

67.347

99.42

0.67
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.712

92.464

0.626
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.048

95.942

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

65.312

92.754

0.606
  recA Helicobacter pylori strain NCTC11637

63.58

93.913

0.597
  recA Helicobacter pylori 26695

63.272

93.913

0.594
  recA Latilactobacillus sakei subsp. sakei 23K

63.043

93.333

0.588
  recA Streptococcus mutans UA159

61.468

94.783

0.583
  recA Streptococcus mitis SK321

60

97.101

0.583
  recA Streptococcus pyogenes NZ131

60.976

95.072

0.58
  recA Streptococcus mitis NCTC 12261

61.043

94.493

0.577
  recA Streptococcus pneumoniae Rx1

60.736

94.493

0.574
  recA Streptococcus pneumoniae D39

60.736

94.493

0.574
  recA Streptococcus pneumoniae R6

60.736

94.493

0.574
  recA Streptococcus pneumoniae TIGR4

60.736

94.493

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.716

94.783

0.557
  recA Lactococcus lactis subsp. cremoris KW2

58.642

93.913

0.551