Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   P1P91_RS11735 Genome accession   NZ_CP119391
Coordinates   2502191..2503264 (-) Length   357 a.a.
NCBI ID   WP_311882835.1    Uniprot ID   -
Organism   Halomonas piscis strain SG2L-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2497191..2508264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1P91_RS11720 (P1P91_11710) - 2497506..2498756 (-) 1251 WP_311882830.1 aspartate kinase -
  P1P91_RS11725 (P1P91_11715) alaS 2498909..2501518 (-) 2610 WP_311882832.1 alanine--tRNA ligase -
  P1P91_RS11730 (P1P91_11720) - 2501723..2502187 (-) 465 WP_311882834.1 regulatory protein RecX -
  P1P91_RS11735 (P1P91_11725) recA 2502191..2503264 (-) 1074 WP_311882835.1 recombinase RecA Machinery gene
  P1P91_RS11740 (P1P91_11730) - 2503347..2503871 (-) 525 WP_311882836.1 CinA family protein -
  P1P91_RS11745 (P1P91_11735) mutS 2504023..2506587 (+) 2565 WP_311882837.1 DNA mismatch repair protein MutS -
  P1P91_RS11750 (P1P91_11740) fdxA 2506738..2507061 (+) 324 WP_311882838.1 ferredoxin FdxA -
  P1P91_RS11755 (P1P91_11745) - 2507138..2507419 (+) 282 WP_311882840.1 DUF503 domain-containing protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38283.56 Da        Isoelectric Point: 4.8157

>NTDB_id=798779 P1P91_RS11735 WP_311882835.1 2502191..2503264(-) (recA) [Halomonas piscis strain SG2L-4]
MAQDENRSKALEAALGQIDRQFGKGTVMRLGDAPRVTMPSVSTGSLGLDIALGIGGLPFGRVVEIFGPESSGKTTLTLSV
IAEAQKQGKVCAFVDAEHALDPSYAEKLGINLDDLLVSQPDTGEQALEITDMLVRSGGVDVIIIDSVAALTPRAEIEGEM
GDSHVGLQARLMSQALRKITGNIKNANCMVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSVKSGDEVTG
NETRVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVVDLGVQCSLVDKAGAWYSYKGKKIGQGKANAAQYLEDNPEIMEEI
ESQIRAQLLAQPESEKEGEKKADGEAAEKPAENDELL

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=798779 P1P91_RS11735 WP_311882835.1 2502191..2503264(-) (recA) [Halomonas piscis strain SG2L-4]
ATGGCTCAGGATGAAAACCGCAGCAAAGCGCTGGAAGCCGCGCTTGGTCAGATTGACCGTCAGTTCGGCAAGGGCACCGT
CATGCGCCTGGGCGATGCGCCCCGGGTGACCATGCCCTCGGTCTCCACCGGCTCGCTGGGGCTGGATATCGCGCTGGGCA
TTGGCGGGCTGCCCTTTGGCCGGGTGGTGGAAATTTTCGGCCCGGAGTCCTCGGGCAAGACCACGTTGACGCTGTCGGTC
ATCGCCGAGGCGCAAAAGCAGGGCAAGGTGTGCGCCTTTGTCGACGCCGAGCATGCCCTTGACCCCAGCTACGCCGAAAA
GCTCGGCATCAACCTTGACGACCTGCTGGTCTCTCAGCCGGACACCGGCGAGCAGGCGCTGGAAATCACCGACATGCTGG
TGCGCTCCGGCGGCGTCGACGTGATCATCATCGACTCGGTGGCAGCGCTGACGCCGCGGGCCGAAATCGAAGGCGAAATG
GGCGATTCCCACGTCGGCCTCCAGGCCCGGCTGATGTCCCAGGCGCTGCGCAAGATCACCGGCAACATCAAGAACGCCAA
CTGCATGGTGGTGTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCCGAAACCACCACCGGCGGCA
ATGCGCTGAAGTTCTACTCAAGCGTGCGGCTGGATATCCGCCGCACCGGCTCGGTGAAGTCCGGCGACGAGGTTACCGGC
AACGAGACCCGGGTGAAGGTGGTCAAGAACAAGGTTGCGCCGCCGTTTCGCCAGGCCGAGTTCCAGATTCTCTACGGCAA
GGGGATCTACCACGCCGGCGAAGTGGTCGATCTGGGCGTGCAGTGCAGCCTGGTGGACAAGGCCGGCGCCTGGTACAGCT
ACAAGGGCAAGAAGATCGGCCAGGGCAAGGCCAACGCCGCCCAGTACCTGGAAGACAACCCCGAGATCATGGAAGAGATC
GAGTCGCAGATTCGTGCCCAGCTGCTGGCCCAGCCCGAATCGGAAAAGGAAGGCGAGAAAAAGGCCGACGGGGAAGCGGC
AGAAAAGCCAGCGGAAAACGACGAGCTGCTGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

81.682

93.277

0.762
  recA Acinetobacter baylyi ADP1

71.758

97.199

0.697
  recA Acinetobacter baumannii D1279779

74.54

91.317

0.681
  recA Vibrio cholerae strain A1552

70.997

92.717

0.658
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.997

92.717

0.658
  recA Neisseria gonorrhoeae MS11

67.052

96.919

0.65
  recA Neisseria gonorrhoeae MS11

67.052

96.919

0.65
  recA Neisseria gonorrhoeae strain FA1090

67.052

96.919

0.65
  recA Glaesserella parasuis strain SC1401

70

92.437

0.647
  recA Ralstonia pseudosolanacearum GMI1000

70.476

88.235

0.622
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

91.317

0.58
  recA Helicobacter pylori 26695

61.078

93.557

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.078

93.557

0.571
  recA Helicobacter pylori strain NCTC11637

61.094

92.157

0.563
  recA Streptococcus mitis NCTC 12261

56.215

99.16

0.557
  recA Bacillus subtilis subsp. subtilis str. 168

61.875

89.636

0.555
  recA Streptococcus mitis SK321

55.65

99.16

0.552
  recA Streptococcus pneumoniae D39

54.902

100

0.549
  recA Streptococcus pneumoniae TIGR4

54.902

100

0.549
  recA Streptococcus pneumoniae R6

54.902

100

0.549
  recA Streptococcus pneumoniae Rx1

54.902

100

0.549
  recA Streptococcus mutans UA159

55.085

99.16

0.546
  recA Latilactobacillus sakei subsp. sakei 23K

59.509

91.317

0.543
  recA Streptococcus pyogenes NZ131

57.012

91.877

0.524
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.575

91.597

0.518
  recA Lactococcus lactis subsp. cremoris KW2

55.864

90.756

0.507