Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MT340_RS07830 Genome accession   NZ_CP119327
Coordinates   1564677..1565723 (-) Length   348 a.a.
NCBI ID   WP_243589473.1    Uniprot ID   -
Organism   Staphylococcus sp. NRL 16/872     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1559677..1570723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MT340_RS07815 (MT340_007815) - 1561470..1562264 (-) 795 WP_243589470.1 TIGR00282 family metallophosphoesterase -
  MT340_RS07820 (MT340_007820) - 1562425..1562643 (+) 219 WP_243589471.1 hypothetical protein -
  MT340_RS07825 (MT340_007825) rny 1562807..1564366 (-) 1560 WP_243589472.1 ribonuclease Y -
  MT340_RS07830 (MT340_007830) recA 1564677..1565723 (-) 1047 WP_243589473.1 recombinase RecA Machinery gene
  MT340_RS07835 (MT340_007835) - 1566060..1567202 (-) 1143 WP_243589474.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  MT340_RS07840 (MT340_007840) pgsA 1567360..1567935 (-) 576 WP_243589475.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MT340_RS07845 (MT340_007845) - 1567970..1568362 (-) 393 WP_243589476.1 helix-turn-helix domain-containing protein -
  MT340_RS07850 (MT340_007850) - 1568384..1569214 (-) 831 WP_243603733.1 YmfK family protein -
  MT340_RS07855 (MT340_007855) - 1569335..1570039 (-) 705 WP_243589477.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37968.97 Da        Isoelectric Point: 5.0297

>NTDB_id=798493 MT340_RS07830 WP_243589473.1 1564677..1565723(-) (recA) [Staphylococcus sp. NRL 16/872]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKIVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENEIVDKSGAWYSYNGERMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEEKEEEKPQSLFDEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=798493 MT340_RS07830 WP_243589473.1 1564677..1565723(-) (recA) [Staphylococcus sp. NRL 16/872]
TTGGATAATGAACGTCAAAAAGCTTTAGATACAGTTATTAAAAATATGGAAAAATCCTTTGGTAAAGGTGCTGTTATGAA
ATTAGGCGATAATAAAGGTCGTCGTGTTTCAAGCACTTCAACTGGCTCAGTTACTTTAGATAACGCTTTAGGTGTCGGAG
GGTATCCTAAAGGAAGAATCATTGAAATTTATGGTCCTGAAAGTTCAGGTAAAACTACAGTTGCTTTACATGCTATTGCT
GAAGTACAAAAAAATGGAGGCGTAGCTGCATTTATTGATGCTGAACACGCGCTTGATCCTGTGTACGCAGAAGCTTTAGG
TGTAGATATTGATAACTTATATTTATCTCAACCAGACCATGGTGAACAGGGTCTAGAAATTGCAGAAGCATTTGTGAGAA
GTGGCGCAGTGGATATCGTAGTAGTCGACTCTGTAGCAGCTTTAACGCCAAAAGCAGAAATTGAAGGAGAAATGGGCGAT
ACTCACGTAGGTTTACAAGCTCGTTTAATGTCACAAGCATTACGTAAACTTTCAGGTGCAATTTCTAAATCTAATACTAC
TGCAATATTTATTAACCAAATTCGTGAAAAAGTTGGCGTAATGTTTGGTAATCCAGAAACTACGCCTGGTGGTAGAGCAT
TAAAATTCTATAGTTCTGTTCGTTTAGAAGTACGCCGTGCTGAACAATTAAAACAAGGGCAAGAAATTGTTGGTAATAGA
ACTAAAATTAAAATTGTTAAAAATAAAGTGGCACCTCCATTCAGAGTAGCGGAAGTAGACATAATGTATGGTCAAGGTAT
TTCTAAAGAAGGCGAATTAATCGATCTTGGTGTTGAGAATGAAATCGTTGATAAATCAGGTGCATGGTACTCATATAATG
GAGAAAGAATGGGTCAAGGTAAAGAAAACGTTAAAACTTACCTTAAAGAAAATCCTCAAATAAAAGAAGAAATTGATCGA
AAATTACGTGAAAAACTTGGTATTTTTGACGGTGATGTTGAAGAAAAAGAAGAAGAAAAACCTCAATCTTTATTTGACGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.074

93.678

0.713
  recA Latilactobacillus sakei subsp. sakei 23K

68.103

100

0.681
  recA Streptococcus mutans UA159

65.598

98.563

0.647
  recA Streptococcus pneumoniae R6

65.029

99.425

0.647
  recA Streptococcus pneumoniae Rx1

65.029

99.425

0.647
  recA Streptococcus pneumoniae D39

65.029

99.425

0.647
  recA Streptococcus pneumoniae TIGR4

65.029

99.425

0.647
  recA Streptococcus pyogenes NZ131

68.389

94.54

0.647
  recA Streptococcus mitis NCTC 12261

64.928

99.138

0.644
  recA Streptococcus mitis SK321

64.638

99.138

0.641
  recA Acinetobacter baumannii D1279779

64.08

100

0.641
  recA Acinetobacter baylyi ADP1

63.977

99.713

0.638
  recA Neisseria gonorrhoeae strain FA1090

63.689

99.713

0.635
  recA Neisseria gonorrhoeae MS11

63.689

99.713

0.635
  recA Neisseria gonorrhoeae MS11

63.689

99.713

0.635
  recA Lactococcus lactis subsp. cremoris KW2

65.559

95.115

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.957

94.54

0.624
  recA Helicobacter pylori 26695

64.939

94.253

0.612
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.337

93.678

0.612
  recA Vibrio cholerae strain A1552

65.337

93.678

0.612
  recA Helicobacter pylori strain NCTC11637

64.634

94.253

0.609
  recA Ralstonia pseudosolanacearum GMI1000

65.815

89.943

0.592
  recA Pseudomonas stutzeri DSM 10701

62.577

93.678

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

95.115

0.578
  recA Glaesserella parasuis strain SC1401

61.111

93.103

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.755

91.667

0.566