Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PY247_RS19195 Genome accession   NZ_CP119223
Coordinates   3915835..3916881 (+) Length   348 a.a.
NCBI ID   WP_004652989.1    Uniprot ID   A0A653KBA4
Organism   Acinetobacter proteolyticus strain AP54     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3910835..3921881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY247_RS19170 (PY247_19170) - 3912333..3912749 (+) 417 WP_275573296.1 hypothetical protein -
  PY247_RS19175 (PY247_19175) - 3912898..3913630 (-) 733 Protein_3748 phosphoglycerate mutase family protein -
  PY247_RS19180 (PY247_19180) - 3913682..3914539 (-) 858 WP_275573297.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  PY247_RS19185 (PY247_19185) - 3914551..3915255 (+) 705 WP_070075103.1 HAD-IA family hydrolase -
  PY247_RS19190 (PY247_19190) - 3915239..3915665 (+) 427 Protein_3751 S4 domain-containing protein -
  PY247_RS19195 (PY247_19195) recA 3915835..3916881 (+) 1047 WP_004652989.1 recombinase RecA Machinery gene
  PY247_RS19200 (PY247_19200) - 3916924..3917397 (+) 474 WP_275573298.1 regulatory protein RecX -
  PY247_RS19210 (PY247_19210) - 3917829..3918681 (+) 853 Protein_3754 YbgF trimerization domain-containing protein -
  PY247_RS19215 (PY247_19215) - 3918745..3920616 (-) 1872 WP_275573299.1 SurA N-terminal domain-containing protein -
  PY247_RS19220 (PY247_19220) - 3920756..3921027 (-) 272 Protein_3756 HU family DNA-binding protein -
  PY247_RS19225 (PY247_19225) - 3921195..3921650 (-) 456 WP_070075107.1 phasin family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37996.39 Da        Isoelectric Point: 5.0470

>NTDB_id=798229 PY247_RS19195 WP_004652989.1 3915835..3916881(+) (recA) [Acinetobacter proteolyticus strain AP54]
MDDNKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKNGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEITGNE
TRVKVVKNKMAPPFKEAVFQIMYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRHFEENAQMAQEIEK
LIREQLLTKNKPAENTDIEEEEPDFLES

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=798229 PY247_RS19195 WP_004652989.1 3915835..3916881(+) (recA) [Acinetobacter proteolyticus strain AP54]
ATGGATGATAATAAAAGTAAGGCGTTACAAGCTGCGTTGAGCCAGATTGAAAAACAATTTGGTAAAAATACAGTCATGCG
CTTAGGTGACAACACCGTACAAGCAGTTGAAGCTGTTTCTACGGGTTCTTTAACACTCGATATCGCATTAGGGATTGGCG
GATTACCTAAAGGCCGTATCATTGAAATTTACGGTCCTGAATCATCAGGTAAAACGACCATGACATTGCAGGCCATTGCT
CAATGTCAAAAGAATGGCGGTACCTGTGCCTTTATCGATGCCGAACATGCATTAGATCCAGAATACGCACGTAAACTTGG
TGTCGATATTGACAACCTTTTGGTTTCACAACCTGACCACGGTGAGCAAGCACTCGAAATTGCGGATATGTTGGTACGCT
CAGGCGCAATCGATTTAATCGTTGTCGACTCTGTTGCAGCATTGACCCCGAAAGCCGAAATTGAAGGCGAAATGGGTGAC
TCACATATGGGCTTGCAAGCACGTTTAATGAGTCAGGCACTCCGTAAAATTACAGGTAATGCGAAACGCTCTAACTGTAT
GGTGATCTTCATTAACCAAATCCGTATGAAGATTGGGGTGATGTTTGGTAGCCCAGAAACCACAACGGGCGGTAACGCAC
TTAAATTCTATGCTTCTGTACGTTTAGATATCCGTCGTATCGGTCAAGTAAAAGAAGGCGACGAAATTACGGGTAATGAA
ACACGCGTTAAAGTTGTAAAAAACAAAATGGCGCCTCCGTTTAAAGAAGCGGTATTCCAGATCATGTATGGTAAAGGGAC
TAACCAACTCGGTGAATTGGTTGATCTTGCAGTTCAACAGGATATCGTACAAAAAGCGGGTGCTTGGTATTCATATCAAG
GCAATAAAATTGGCCAAGGTAAAAATAACGTGATTCGTCATTTTGAAGAGAATGCACAAATGGCTCAAGAAATTGAAAAG
CTGATTCGTGAACAACTTCTCACCAAGAACAAGCCAGCTGAAAATACAGATATTGAAGAAGAAGAACCAGATTTCTTAGA
AAGCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653KBA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

92.197

99.425

0.917
  recA Acinetobacter baylyi ADP1

91.404

100

0.917
  recA Pseudomonas stutzeri DSM 10701

72.093

98.851

0.713
  recA Vibrio cholerae strain A1552

73.7

93.966

0.693
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.7

93.966

0.693
  recA Ralstonia pseudosolanacearum GMI1000

68.657

96.264

0.661
  recA Glaesserella parasuis strain SC1401

70.37

93.103

0.655
  recA Neisseria gonorrhoeae MS11

68.827

93.103

0.641
  recA Neisseria gonorrhoeae MS11

68.827

93.103

0.641
  recA Neisseria gonorrhoeae strain FA1090

68.827

93.103

0.641
  recA Helicobacter pylori strain NCTC11637

62.319

99.138

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.682

98.563

0.618
  recA Helicobacter pylori 26695

62.029

99.138

0.615
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.473

95.977

0.609
  recA Streptococcus mutans UA159

58.333

100

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.127

90.517

0.58
  recA Streptococcus pyogenes NZ131

61.846

93.391

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

62.422

92.529

0.578
  recA Streptococcus pneumoniae R6

61.656

93.678

0.578
  recA Streptococcus pneumoniae Rx1

61.656

93.678

0.578
  recA Streptococcus pneumoniae D39

61.656

93.678

0.578
  recA Streptococcus pneumoniae TIGR4

61.656

93.678

0.578
  recA Streptococcus mitis NCTC 12261

61.043

93.678

0.572
  recA Streptococcus mitis SK321

61.043

93.678

0.572
  recA Latilactobacillus sakei subsp. sakei 23K

57.353

97.701

0.56
  recA Lactococcus lactis subsp. cremoris KW2

59.443

92.816

0.552