Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PWH52_RS17465 Genome accession   NZ_CP119084
Coordinates   3744219..3745280 (-) Length   353 a.a.
NCBI ID   WP_024557203.1    Uniprot ID   A0A0J8VLR3
Organism   Franconibacter daqui strain HNU6-13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3739219..3750280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWH52_RS17450 csrA 3740449..3740634 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  PWH52_RS17455 alaS 3740881..3743508 (-) 2628 WP_338463906.1 alanine--tRNA ligase -
  PWH52_RS17460 recX 3743645..3744169 (-) 525 WP_024559825.1 recombination regulator RecX -
  PWH52_RS17465 recA 3744219..3745280 (-) 1062 WP_024557203.1 recombinase RecA Machinery gene
  PWH52_RS17470 pncC 3745368..3745865 (-) 498 WP_024557202.1 nicotinamide-nucleotide amidase -
  PWH52_RS17475 mltB 3746008..3747099 (-) 1092 WP_048887890.1 lytic murein transglycosylase B -
  PWH52_RS17480 mutS 3747514..3750081 (+) 2568 WP_338463907.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37991.42 Da        Isoelectric Point: 4.8893

>NTDB_id=797614 PWH52_RS17465 WP_024557203.1 3744219..3745280(-) (recA) [Franconibacter daqui strain HNU6-13]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQRAGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDDVIG
SETRVKVVKNKVAAPFKQAEFQILYGEGINFYGELVDLGVKHKLIEKAGAWYSYNGEKIGQGKANATNFLKENKPMAEEI
EKKLRELLLNNHDAIPAFAAEDGDNAEETNEEF

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=797614 PWH52_RS17465 WP_024557203.1 3744219..3745280(-) (recA) [Franconibacter daqui strain HNU6-13]
ATGGCTATCGACGAAAACAAGCAAAAGGCGTTAGCGGCAGCACTTGGCCAGATTGAGAAGCAATTCGGCAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGCACTATGGATGTGGAAACCATCTCTACCGGTTCACTCTCTCTGGATATTGCGCTGGGTG
CCGGTGGTTTGCCGATGGGCCGTATCGTGGAAATCTACGGTCCGGAATCGTCTGGTAAAACCACGCTGACGCTGCAGGTT
ATCGCTGCGGCACAGCGTGCTGGCAAGACATGCGCCTTTATCGATGCGGAACATGCACTCGATCCGGTGTATGCGCGTAA
GCTGGGCGTAGATATCGACAATCTGCTCTGCTCTCAGCCGGATACCGGCGAGCAGGCGCTGGAAATTTGTGACGCGCTGG
CGCGCTCCGGCGCTGTAGACGTGCTCGTTGTCGACTCCGTTGCGGCGCTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCGCGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAAAACTCTAA
CACCCTGCTTATCTTCATCAACCAGATCCGTATGAAGATTGGCGTGATGTTCGGTAACCCGGAAACCACCACTGGCGGTA
ACGCGCTGAAGTTCTACGCTTCCGTTCGTCTGGATATTCGCCGCATCGGTGCGGTGAAAGAGGGCGATGATGTTATCGGC
AGCGAAACCCGCGTTAAAGTGGTCAAAAACAAAGTGGCTGCGCCGTTTAAACAAGCTGAATTCCAGATCCTTTACGGTGA
AGGCATCAACTTCTACGGCGAGCTGGTTGACCTGGGCGTGAAGCACAAGCTGATTGAAAAAGCGGGTGCATGGTACAGCT
ACAACGGCGAGAAAATCGGTCAGGGTAAAGCTAACGCGACCAACTTCCTCAAAGAGAACAAACCGATGGCGGAAGAGATT
GAGAAAAAGCTGCGCGAGCTGCTGCTCAATAACCACGACGCTATCCCGGCCTTCGCCGCTGAAGACGGTGACAACGCCGA
AGAGACAAACGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J8VLR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

83.841

92.918

0.779
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.841

92.918

0.779
  recA Acinetobacter baylyi ADP1

72

99.15

0.714
  recA Pseudomonas stutzeri DSM 10701

73.021

96.601

0.705
  recA Acinetobacter baumannii D1279779

74.618

92.635

0.691
  recA Glaesserella parasuis strain SC1401

69.628

98.867

0.688
  recA Neisseria gonorrhoeae MS11

69.018

92.351

0.637
  recA Neisseria gonorrhoeae MS11

69.018

92.351

0.637
  recA Neisseria gonorrhoeae strain FA1090

69.018

92.351

0.637
  recA Ralstonia pseudosolanacearum GMI1000

71.061

88.102

0.626
  recA Helicobacter pylori strain NCTC11637

62.018

95.467

0.592
  recA Helicobacter pylori 26695

61.721

95.467

0.589
  recA Bacillus subtilis subsp. subtilis str. 168

64.174

90.935

0.584
  recA Latilactobacillus sakei subsp. sakei 23K

62.462

92.068

0.575
  recA Streptococcus mutans UA159

62.462

92.068

0.575
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.346

91.785

0.572
  recA Streptococcus pyogenes NZ131

62.154

92.068

0.572
  recA Lactococcus lactis subsp. cremoris KW2

62.229

91.501

0.569
  recA Streptococcus pneumoniae D39

62.229

91.501

0.569
  recA Streptococcus pneumoniae R6

62.229

91.501

0.569
  recA Streptococcus pneumoniae TIGR4

62.229

91.501

0.569
  recA Streptococcus pneumoniae Rx1

62.229

91.501

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.542

94.051

0.569
  recA Streptococcus mitis NCTC 12261

61.92

91.501

0.567
  recA Streptococcus mitis SK321

61.92

91.501

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

90.935

0.558