Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PYW31_RS08010 Genome accession   NZ_CP118976
Coordinates   1637199..1638245 (-) Length   348 a.a.
NCBI ID   WP_046836280.1    Uniprot ID   A0A1S2MKV9
Organism   Staphylococcus succinus strain DSM 14617     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1632199..1643245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW31_RS07995 - 1633946..1634734 (-) 789 WP_046836283.1 TIGR00282 family metallophosphoesterase -
  PYW31_RS08000 - 1634905..1635120 (+) 216 WP_046836282.1 hypothetical protein -
  PYW31_RS08005 rny 1635296..1636855 (-) 1560 WP_046836281.1 ribonuclease Y -
  PYW31_RS08010 recA 1637199..1638245 (-) 1047 WP_046836280.1 recombinase RecA Machinery gene
  PYW31_RS08015 - 1638417..1639559 (-) 1143 WP_046836279.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  PYW31_RS08020 pgsA 1639953..1640531 (-) 579 WP_046836278.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PYW31_RS08025 - 1640558..1640950 (-) 393 WP_046836277.1 helix-turn-helix domain-containing protein -
  PYW31_RS08030 - 1640987..1641817 (-) 831 WP_046836276.1 DUF3388 domain-containing protein -
  PYW31_RS08035 ymfI 1642022..1642726 (-) 705 WP_046836275.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37849.85 Da        Isoelectric Point: 5.0133

>NTDB_id=797084 PYW31_RS08010 WP_046836280.1 1637199..1638245(-) (recA) [Staphylococcus succinus strain DSM 14617]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQRNGGVAAFIDAEHALDPEYAQALGVDIDNLYLSQPDHGEQGLEISEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVEQEIVDKSGAWYSYNGERMGQGKENVKTYLKENPEVKKEIDQ
KLREKLGIFDGDIEETEVEKPTTLLDEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=797084 PYW31_RS08010 WP_046836280.1 1637199..1638245(-) (recA) [Staphylococcus succinus strain DSM 14617]
TTGGATAACGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAAAAATCATTTGGTAAAGGCGCAGTTATGAA
ATTAGGCGATAACAAAGGTCGTCGAGTTTCTAGTGTATCAAGTGGTTCTGTGACATTAGATAATGCATTAGGTGTAGGTG
GTTACCCTAAAGGGAGAATCATCGAGATTTATGGTCCGGAAAGTTCTGGTAAGACGACAGTTGCATTGCATGCTATAGCT
GAAGTCCAAAGAAATGGTGGCGTCGCAGCATTTATCGATGCTGAACATGCATTAGATCCTGAATATGCACAAGCGTTAGG
TGTCGATATCGACAATCTATATTTATCGCAACCTGACCATGGTGAACAAGGGTTAGAAATTTCAGAGGCATTCGTTAGAA
GTGGCGCTGTTGATATTGTGGTCGTTGACTCCGTAGCTGCTTTAACTCCAAAAGCTGAAATTGAAGGTGAAATGGGTGAT
ACGCATGTTGGTTTACAAGCGCGTTTAATGTCCCAAGCCTTACGTAAACTTTCTGGTGCAATTTCGAAATCAAACACTAC
GGCAGTGTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCTGAGGTTACCCCAGGGGGACGCGCAT
TAAAATTCTATAGTTCAGTACGCTTAGAAGTTCGTAGAGCAGAACAATTAAAACAAGGCCAAGATATTGTTGGTAATAGA
ACAAAAATTAAAGTAGTTAAAAACAAAGTAGCACCGCCATTTAGAGTTGCAGAAGTAGATATCATGTATGGACAAGGTAT
CTCAAAAGAGGGCGAATTGATTGATTTAGGTGTAGAACAAGAAATTGTTGATAAATCAGGCGCTTGGTACTCTTATAATG
GTGAACGTATGGGTCAAGGTAAAGAAAATGTGAAAACATACCTTAAAGAGAATCCGGAAGTCAAAAAAGAAATAGACCAA
AAATTACGTGAAAAACTTGGTATCTTTGATGGCGATATTGAAGAGACTGAAGTAGAAAAGCCTACAACGCTTCTTGACGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S2MKV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.38

93.678

0.716
  recA Latilactobacillus sakei subsp. sakei 23K

69.253

100

0.693
  recA Streptococcus pyogenes NZ131

66.869

94.54

0.632
  recA Neisseria gonorrhoeae MS11

63.295

99.425

0.629
  recA Neisseria gonorrhoeae strain FA1090

63.295

99.425

0.629
  recA Neisseria gonorrhoeae MS11

63.295

99.425

0.629
  recA Streptococcus mutans UA159

65.269

95.977

0.626
  recA Streptococcus pneumoniae D39

65.465

95.69

0.626
  recA Streptococcus mitis SK321

65.465

95.69

0.626
  recA Streptococcus pneumoniae Rx1

65.465

95.69

0.626
  recA Streptococcus pneumoniae R6

65.465

95.69

0.626
  recA Streptococcus pneumoniae TIGR4

65.465

95.69

0.626
  recA Lactococcus lactis subsp. cremoris KW2

65.559

95.115

0.624
  recA Streptococcus mitis NCTC 12261

65.165

95.69

0.624
  recA Acinetobacter baumannii D1279779

61.782

100

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.742

94.54

0.612
  recA Acinetobacter baylyi ADP1

65.031

93.678

0.609
  recA Vibrio cholerae strain A1552

64.724

93.678

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.724

93.678

0.606
  recA Helicobacter pylori 26695

64.329

94.253

0.606
  recA Helicobacter pylori strain NCTC11637

64.024

94.253

0.603
  recA Pseudomonas stutzeri DSM 10701

60.947

97.126

0.592
  recA Ralstonia pseudosolanacearum GMI1000

64.856

89.943

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

95.402

0.572
  recA Glaesserella parasuis strain SC1401

60.681

92.816

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

91.954

0.552