Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PYW38_RS18615 Genome accession   NZ_CP118958
Coordinates   3612973..3614004 (-) Length   343 a.a.
NCBI ID   WP_002014599.1    Uniprot ID   J8B5M7
Organism   Bacillus mycoides strain DSM 2048     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3607973..3619004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW38_RS18595 - 3608557..3609480 (-) 924 WP_002128703.1 dipeptidase -
  PYW38_RS18600 spoVS 3609540..3609800 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  PYW38_RS18605 - 3609950..3610744 (-) 795 WP_002014601.1 TIGR00282 family metallophosphoesterase -
  PYW38_RS18610 rny 3610924..3612489 (-) 1566 WP_002014600.1 ribonuclease Y -
  PYW38_RS18615 recA 3612973..3614004 (-) 1032 WP_002014599.1 recombinase RecA Machinery gene
  PYW38_RS18620 cinA 3614147..3615385 (-) 1239 WP_003191012.1 competence/damage-inducible protein A Machinery gene
  PYW38_RS18625 pgsA 3615406..3615984 (-) 579 WP_002014596.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PYW38_RS18630 - 3616048..3616974 (-) 927 WP_016127442.1 helix-turn-helix domain-containing protein -
  PYW38_RS18635 - 3616996..3617781 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  PYW38_RS18640 - 3617921..3618169 (-) 249 WP_000114449.1 DUF3243 domain-containing protein -
  PYW38_RS18645 ymfI 3618246..3618959 (-) 714 WP_002014593.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37384.32 Da        Isoelectric Point: 5.0859

>NTDB_id=796837 PYW38_RS18615 WP_002014599.1 3612973..3614004(-) (recA) [Bacillus mycoides strain DSM 2048]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERRISTISSGSLALDVALGVGGYPRGRVIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFF
VREHHGIGENSGVEDTEDSTRQD

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=796837 PYW38_RS18615 WP_002014599.1 3612973..3614004(-) (recA) [Bacillus mycoides strain DSM 2048]
ATGAGCGATCGTCAAGCGGCATTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGTTCAATTATGAAATT
AGGAGAACAAGCGGAGCGTAGAATTTCTACAATTTCAAGTGGTTCTTTAGCACTTGATGTGGCACTAGGGGTAGGTGGAT
ACCCACGTGGCCGTGTTATTGAAATTTATGGACCTGAAAGTTCAGGTAAAACAACAGTTTCATTACACGCAATCGCGGAA
GTACAGCGTCAAGGTGGACAAGCAGCGTTCATTGATGCGGAGCATGCAATGGATCCTGTATATGCACAAAAATTAGGTGT
TAACATAGATGAATTACTATTATCACAGCCTGATACAGGGGAGCAAGGACTAGAAATCGCAGAAGCACTTGTACGAAGTG
GAGCGGTTGATATTATCGTAATTGACTCTGTGGCAGCTCTTGTACCGAAAGCTGAGATCGAAGGGGACATGGGTGACTCT
CACGTTGGTTTACAAGCACGTTTAATGTCACAAGCACTTCGTAAACTTTCAGGTGCAATCAACAAATCAAAAACAATCGC
AATCTTTATCAACCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGGAACCCAGAAACAACTCCAGGTGGTCGTGCGTTGA
AATTCTATTCAACTGTCCGTCTTGAAGTACGTCGTGCTGAGCAGTTAAAGCAAGGTAACGATATTGTTGGTAATAAAACG
AAAGTAAAAGTAGTTAAAAATAAAGTAGCACCGCCATTCCGTGTTGCTGAAGTTGATATTATGTACGGAGAAGGTATTTC
AAGAGAAGGTGAAATCTTAGATATGGCTTCTGAACTTGATATCGTTCAAAAGAGCGGTGCTTGGTACTCTTATAATGAAG
AACGCTTAGGACAAGGTCGTGAAAATTCGAAGCAATTCTTAAAAGAGAATACGGATTTAAGAGAAGAAATTGCCTTCTTT
GTTCGTGAACATCACGGAATTGGTGAAAACTCTGGTGTTGAAGACACGGAAGATTCAACTCGTCAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8B5M7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.787

97.085

0.843
  recA Latilactobacillus sakei subsp. sakei 23K

75.841

95.335

0.723
  recA Streptococcus pneumoniae D39

67.93

100

0.679
  recA Streptococcus pneumoniae Rx1

67.93

100

0.679
  recA Streptococcus pneumoniae R6

67.93

100

0.679
  recA Streptococcus pneumoniae TIGR4

67.93

100

0.679
  recA Streptococcus mutans UA159

66.377

100

0.668
  recA Streptococcus pyogenes NZ131

69.817

95.627

0.668
  recA Streptococcus mitis SK321

69.091

96.21

0.665
  recA Streptococcus mitis NCTC 12261

69.091

96.21

0.665
  recA Lactococcus lactis subsp. cremoris KW2

66.667

97.959

0.653
  recA Neisseria gonorrhoeae strain FA1090

64.012

98.834

0.633
  recA Neisseria gonorrhoeae MS11

64.012

98.834

0.633
  recA Neisseria gonorrhoeae MS11

64.012

98.834

0.633
  recA Ralstonia pseudosolanacearum GMI1000

68.371

91.254

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.501

98.251

0.624
  recA Glaesserella parasuis strain SC1401

61.562

97.085

0.598
  recA Helicobacter pylori 26695

62.5

95.627

0.598
  recA Helicobacter pylori strain NCTC11637

62.5

95.627

0.598
  recA Acinetobacter baumannii D1279779

60.117

99.417

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

95.335

0.595
  recA Vibrio cholerae strain A1552

63.24

93.586

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.24

93.586

0.592
  recA Acinetobacter baylyi ADP1

61.801

93.878

0.58
  recA Pseudomonas stutzeri DSM 10701

62.54

91.837

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.443

92.128

0.557