Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PYW30_RS01145 Genome accession   NZ_CP118950
Coordinates   230467..231618 (+) Length   383 a.a.
NCBI ID   WP_042217627.1    Uniprot ID   -
Organism   Lactococcus garvieae subsp. garvieae strain DSM 20684     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 225467..236618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW30_RS01135 era 228436..229347 (+) 912 WP_003133835.1 GTPase Era -
  PYW30_RS01140 mutM 229542..230363 (+) 822 WP_042217630.1 DNA-formamidopyrimidine glycosylase -
  PYW30_RS01145 recA 230467..231618 (+) 1152 WP_042217627.1 recombinase RecA Machinery gene
  PYW30_RS01150 - 231653..233017 (-) 1365 WP_042217625.1 amino acid permease -
  PYW30_RS01155 - 233224..233598 (+) 375 WP_042217623.1 YlbF family regulator -
  PYW30_RS01160 - 233582..233938 (+) 357 WP_003133842.1 YlbG family protein -
  PYW30_RS01165 - 233997..234515 (-) 519 WP_042217622.1 hypothetical protein -
  PYW30_RS01170 - 234644..235240 (-) 597 WP_003133845.1 CYTH domain-containing protein -
  PYW30_RS01175 - 235558..236238 (+) 681 WP_016171021.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40882.77 Da        Isoelectric Point: 5.0750

>NTDB_id=796673 PYW30_RS01145 WP_042217627.1 230467..231618(+) (recA) [Lactococcus garvieae subsp. garvieae strain DSM 20684]
MATKKKKKLEDITKKYGAEREKALKDALDLIEKDFGKGSLMRLGEAASQKVQVTSSGSLALDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQVQAEGGIAAFIDAEHALDPVYAAAIGVDIDQLLLSQPDYGEQGLQIAEKLIESGAVDLVVVDSV
AALTPRAEIDGEIGDSTVGLQARMMSQAMRKLAAGINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GSTKIEEGSGDNKTAIGKLTKIKVVKNKVAPPFKVALVDIMFGEGISKTGELLTIAVEEGIVKKAGAWFSYNDEKIGQGA
EKAKAFLKDNPEIFNEIDRKVRQNHGLTEGDEADEKEEVKPAKADEKAKVEAAGVEEIELELE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=796673 PYW30_RS01145 WP_042217627.1 230467..231618(+) (recA) [Lactococcus garvieae subsp. garvieae strain DSM 20684]
ATGGCTACAAAGAAAAAGAAAAAATTAGAAGATATCACAAAAAAATATGGTGCAGAACGTGAAAAAGCGTTAAAAGATGC
GCTTGACCTTATCGAAAAGGATTTTGGTAAAGGTTCTTTGATGCGTTTGGGTGAAGCTGCGAGCCAAAAAGTTCAAGTGA
CAAGTTCAGGAAGCTTGGCTTTGGATATTGCACTTGGTGCCGGTGGTTATCCTAAAGGTCGTATCATCGAAATCTACGGA
CCAGAAAGTTCTGGTAAGACTACGGTTGCGTTGCATGCGGTTGCTCAAGTGCAAGCCGAAGGCGGGATTGCTGCCTTTAT
CGATGCGGAGCACGCTTTGGATCCTGTCTATGCTGCAGCGATCGGTGTCGACATTGACCAACTTCTTTTGTCACAACCTG
ACTATGGTGAACAAGGCTTACAAATTGCTGAAAAATTGATTGAATCTGGTGCAGTGGACCTTGTTGTTGTCGACTCTGTT
GCTGCCTTGACACCCCGTGCCGAAATTGACGGTGAAATCGGAGATTCGACAGTTGGTTTGCAAGCACGTATGATGAGTCA
AGCCATGCGTAAGCTTGCTGCAGGCATCAACAAAACAAAAACAACAGCAATCTTTATCAACCAATTGCGTGAAAAAGTTG
GTGTTATGTTTGGGAGTCCTGAAACAACACCTGGTGGTCGTGCCTTGAAATTCTATGCTTCTGTACGTTTAGATGTTCGT
GGCAGCACAAAAATCGAAGAAGGTTCCGGTGACAACAAAACAGCCATTGGTAAATTAACGAAGATTAAAGTCGTTAAAAA
CAAAGTTGCGCCACCGTTTAAAGTTGCTTTAGTAGACATCATGTTTGGCGAAGGTATTTCTAAAACAGGTGAACTCTTAA
CCATTGCCGTTGAAGAAGGCATTGTGAAGAAAGCAGGGGCTTGGTTCTCTTATAATGATGAAAAAATCGGTCAAGGTGCG
GAGAAAGCGAAAGCCTTCCTTAAAGATAATCCTGAAATTTTCAATGAAATCGACCGTAAAGTACGTCAAAATCACGGTTT
GACTGAAGGTGATGAAGCGGATGAAAAAGAAGAGGTTAAACCAGCAAAAGCAGATGAAAAAGCAAAAGTTGAAGCTGCTG
GCGTAGAAGAAATCGAGCTTGAATTAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Lactococcus lactis subsp. cremoris KW2

86.364

91.906

0.794
  recA Streptococcus mitis NCTC 12261

77.895

99.217

0.773
  recA Streptococcus mitis SK321

77.895

99.217

0.773
  recA Streptococcus pneumoniae Rx1

77.632

99.217

0.77
  recA Streptococcus pneumoniae D39

77.632

99.217

0.77
  recA Streptococcus pneumoniae R6

77.632

99.217

0.77
  recA Streptococcus pneumoniae TIGR4

77.632

99.217

0.77
  recA Streptococcus mutans UA159

77.049

95.561

0.736
  recA Streptococcus pyogenes NZ131

80.523

89.817

0.723
  recA Latilactobacillus sakei subsp. sakei 23K

63.636

91.906

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

65.455

86.162

0.564
  recA Acinetobacter baylyi ADP1

58.48

89.295

0.522
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.347

87.99

0.522
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.303

86.162

0.52
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.726

89.556

0.517
  recA Glaesserella parasuis strain SC1401

57.31

89.295

0.512
  recA Vibrio cholerae strain A1552

60.185

84.595

0.509
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.185

84.595

0.509
  recA Acinetobacter baumannii D1279779

60.185

84.595

0.509
  recA Neisseria gonorrhoeae MS11

57.738

87.728

0.507
  recA Neisseria gonorrhoeae MS11

57.738

87.728

0.507
  recA Neisseria gonorrhoeae strain FA1090

57.738

87.728

0.507
  recA Helicobacter pylori 26695

58.133

86.684

0.504
  recA Helicobacter pylori strain NCTC11637

58.133

86.684

0.504
  recA Ralstonia pseudosolanacearum GMI1000

57.879

86.162

0.499
  recA Pseudomonas stutzeri DSM 10701

56.173

84.595

0.475