Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NTP66_RS04330 Genome accession   NZ_CP118863
Coordinates   1011039..1012106 (+) Length   355 a.a.
NCBI ID   WP_094962029.1    Uniprot ID   -
Organism   Providencia rettgeri strain 12100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1006039..1017106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NTP66_RS04310 aroL 1006427..1006924 (+) 498 WP_004264804.1 shikimate kinase AroL -
  NTP66_RS04315 aas 1007065..1009212 (+) 2148 WP_140172713.1 bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase -
  NTP66_RS04320 lplT 1009214..1010416 (+) 1203 WP_140172712.1 lysophospholipid transporter LplT -
  NTP66_RS04325 pncC 1010431..1010934 (+) 504 WP_004264808.1 nicotinamide-nucleotide amidase -
  NTP66_RS04330 recA 1011039..1012106 (+) 1068 WP_094962029.1 recombinase RecA Machinery gene
  NTP66_RS04335 alaS 1012433..1015060 (+) 2628 WP_140172711.1 alanine--tRNA ligase -
  NTP66_RS04340 csrA 1015288..1015473 (+) 186 WP_004264815.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38184.50 Da        Isoelectric Point: 4.8129

>NTDB_id=795954 NTP66_RS04330 WP_094962029.1 1011039..1012106(+) (recA) [Providencia rettgeri strain 12100]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDVALGAGGLPLGRIVEIYGPESSGKTTLTLQV
IAAAQRSGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKTSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGEEIVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINTFGELIDLGVKHKLIEKAGAWYSYNGDKIGQGKANSTNYLKEHPEVAQEI
DTKLREMLLNHTGEFSSAATDFISDADEEETPEEF

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=795954 NTP66_RS04330 WP_094962029.1 1011039..1012106(+) (recA) [Providencia rettgeri strain 12100]
ATGGCTATTGATGAAAACAAACAAAAAGCACTTGCAGCAGCATTAGGCCAAATTGAAAAGCAATTTGGTAAAGGTTCCAT
TATGCGTCTTGGTGAAGACCGCTCTATGGATGTTGAAACTATCTCAACAGGCTCCTTATCCCTTGATGTTGCATTGGGTG
CTGGTGGCTTGCCACTAGGTCGTATTGTTGAAATCTACGGCCCTGAATCTTCAGGTAAAACAACACTAACTCTGCAAGTT
ATTGCTGCAGCGCAACGTAGTGGTAAAACATGTGCTTTCATCGATGCTGAACACGCTTTAGACCCTATCTATGCTAAAAA
ATTAGGCGTTGATATCGATAACTTACTATGTTCTCAACCGGACACCGGTGAGCAAGCGCTAGAAATTTGTGATGCATTAA
CTCGCTCAGGTGCGGTTGATGTGATCATCGTTGACTCCGTTGCTGCATTAACACCAAAAGCTGAAATTGAAGGTGAAATT
GGTGATTCACATATGGGCCTAGCTGCTCGTATGATGAGCCAAGCAATGCGTAAGTTAGCTGGTAACTTAAAAACATCTAA
TACCTTACTGATCTTTATCAACCAAATTCGTATGAAGATTGGTGTTATGTTTGGTAACCCAGAAACAACAACAGGTGGTA
ATGCATTAAAATTCTACGCATCTGTTCGTTTAGACATCCGCCGTATTGGTGCTGTTAAAAATGGCGAAGAAATCGTCGGT
AGTGAAACTCGCGTTAAAGTGGTAAAAAACAAAGTTGCAGCACCGTTCAAACAAGCTGAATTCCAAATTTTGTATGGTGA
AGGTATTAATACCTTCGGCGAGTTAATTGACTTAGGTGTAAAACATAAGTTAATTGAAAAAGCAGGGGCTTGGTATAGTT
ATAACGGCGATAAAATTGGCCAAGGTAAAGCTAACTCAACAAATTATTTAAAAGAGCACCCTGAAGTCGCTCAAGAAATT
GATACCAAACTGCGTGAAATGTTATTGAATCACACTGGTGAATTTAGTAGTGCAGCAACAGACTTTATCAGTGATGCTGA
TGAAGAAGAAACACCAGAAGAATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

80.447

100

0.811
  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.447

100

0.811
  recA Pseudomonas stutzeri DSM 10701

71.965

97.465

0.701
  recA Acinetobacter baumannii D1279779

69.801

98.873

0.69
  recA Acinetobacter baylyi ADP1

70.115

98.028

0.687
  recA Glaesserella parasuis strain SC1401

68.376

98.873

0.676
  recA Neisseria gonorrhoeae MS11

65.439

99.437

0.651
  recA Neisseria gonorrhoeae MS11

65.439

99.437

0.651
  recA Neisseria gonorrhoeae strain FA1090

65.439

99.437

0.651
  recA Ralstonia pseudosolanacearum GMI1000

70.74

87.606

0.62
  recA Helicobacter pylori strain NCTC11637

63.303

92.113

0.583
  recA Latilactobacillus sakei subsp. sakei 23K

58.807

99.155

0.583
  recA Helicobacter pylori 26695

62.997

92.113

0.58
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

89.859

0.572
  recA Streptococcus pneumoniae Rx1

62.539

90.986

0.569
  recA Streptococcus pneumoniae D39

62.539

90.986

0.569
  recA Streptococcus pneumoniae R6

62.539

90.986

0.569
  recA Streptococcus pneumoniae TIGR4

62.539

90.986

0.569
  recA Streptococcus mitis SK321

62.229

90.986

0.566
  recA Streptococcus mitis NCTC 12261

61.92

90.986

0.563
  recA Lactococcus lactis subsp. cremoris KW2

61.92

90.986

0.563
  recA Streptococcus pyogenes NZ131

61.231

91.549

0.561
  recA Streptococcus mutans UA159

61.231

91.549

0.561
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

90.423

0.558
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.337

93.521

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.436

90.423

0.546