Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PYH58_RS05805 Genome accession   NZ_CP118813
Coordinates   1195455..1196510 (+) Length   351 a.a.
NCBI ID   WP_025905367.1    Uniprot ID   A0A657XNX9
Organism   Mammaliicoccus sciuri strain 7061     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1190455..1201510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH58_RS05780 (PYH58_05780) - 1191481..1192185 (+) 705 WP_353463671.1 SDR family oxidoreductase -
  PYH58_RS05785 (PYH58_05785) - 1192202..1193017 (+) 816 WP_353463672.1 YmfK family protein -
  PYH58_RS05790 (PYH58_05790) - 1193038..1193433 (+) 396 WP_353463673.1 helix-turn-helix domain-containing protein -
  PYH58_RS05795 (PYH58_05795) pgsA 1193498..1194079 (+) 582 WP_037587820.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PYH58_RS05800 (PYH58_05800) - 1194137..1195285 (+) 1149 WP_353463674.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  PYH58_RS05805 (PYH58_05805) recA 1195455..1196510 (+) 1056 WP_025905367.1 recombinase RecA Machinery gene
  PYH58_RS05810 (PYH58_05810) rny 1196728..1198287 (+) 1560 WP_353463675.1 ribonuclease Y -
  PYH58_RS05815 (PYH58_05815) - 1198582..1200274 (+) 1693 Protein_1117 IS1182 family transposase -
  PYH58_RS05820 (PYH58_05820) - 1200404..1200703 (+) 300 WP_204977515.1 hypothetical protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38174.36 Da        Isoelectric Point: 5.2345

>NTDB_id=795493 PYH58_RS05805 WP_025905367.1 1195455..1196510(+) (recA) [Mammaliicoccus sciuri strain 7061]
MNERQKALDTVIKNMEKSFGKGAVMKLGDNTSREVSAVSSGSITLDKALGVGGYPKGRIIEIYGPESSGKTTVALHAIAE
AQRQGGVAAFIDAEHALDPVYAKNLGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVIVDSVAALTPKAEIEGEMGDT
HVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQEVVGNRT
KIKVVKNKVAPPFRVAEVDIMYGEGISREGELIDLAVEFDIVDKSGAWYSYNGERMGQGKENVKTYLKENPAIIEEIDGI
LRDQLGFNGKKKEEAKKEEKPNEPEQETLLD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=795493 PYH58_RS05805 WP_025905367.1 1195455..1196510(+) (recA) [Mammaliicoccus sciuri strain 7061]
GTGAACGAACGTCAAAAAGCACTCGATACAGTAATTAAGAATATGGAAAAATCCTTTGGTAAAGGGGCAGTAATGAAGCT
AGGGGATAATACAAGTAGAGAAGTATCAGCAGTTTCTAGTGGCTCAATCACACTTGATAAAGCATTAGGTGTGGGTGGTT
ACCCTAAAGGACGTATCATTGAAATATATGGACCAGAAAGTTCTGGTAAAACAACAGTAGCTTTACACGCTATCGCTGAA
GCACAAAGACAAGGTGGCGTAGCTGCTTTTATTGATGCTGAGCACGCACTAGATCCTGTTTATGCTAAAAACTTAGGCGT
AGATATTGATAACCTATATTTATCACAACCTGATCACGGTGAACAAGGTTTAGAGATTGCAGAAGCATTTGTTCGTAGTG
GTGCAGTTGATATTGTTATTGTCGACTCTGTAGCTGCATTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGATACA
CACGTTGGTTTACAAGCAAGATTAATGAGTCAAGCTTTACGTAAATTATCAGGTGCTATTTCTAAATCAAATACAACAGC
TATCTTTATCAACCAAATTCGTGAAAAAGTTGGCGTTATGTTCGGTAATCCTGAAGTTACACCAGGTGGACGTGCGTTGA
AATTCTATAGTTCTGTTCGTTTAGAAGTACGTCGTGCTGAACAATTGAAACAAGGTCAAGAAGTAGTTGGTAACCGTACT
AAAATTAAAGTTGTTAAAAACAAAGTTGCGCCTCCATTCAGAGTAGCAGAAGTTGATATTATGTACGGTGAAGGTATTTC
ACGTGAAGGTGAATTAATCGACTTAGCAGTTGAATTTGATATTGTAGATAAATCAGGTGCTTGGTATTCATATAACGGAG
AACGTATGGGTCAAGGTAAAGAAAACGTTAAGACTTACTTAAAAGAAAACCCAGCTATTATTGAAGAAATTGATGGAATC
TTAAGAGATCAATTAGGCTTTAACGGTAAGAAGAAAGAAGAAGCTAAAAAAGAAGAAAAACCTAATGAGCCTGAACAAGA
AACTTTATTAGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A657XNX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.22

93.447

0.712
  recA Latilactobacillus sakei subsp. sakei 23K

69.231

96.296

0.667
  recA Streptococcus mutans UA159

65.527

100

0.655
  recA Streptococcus pneumoniae D39

64.571

99.715

0.644
  recA Streptococcus pneumoniae Rx1

64.571

99.715

0.644
  recA Streptococcus pneumoniae R6

64.571

99.715

0.644
  recA Streptococcus pneumoniae TIGR4

64.571

99.715

0.644
  recA Streptococcus mitis NCTC 12261

65.789

97.436

0.641
  recA Streptococcus mitis SK321

65.497

97.436

0.638
  recA Streptococcus pyogenes NZ131

68.085

93.732

0.638
  recA Acinetobacter baumannii D1279779

64.62

97.436

0.63
  recA Acinetobacter baylyi ADP1

63.372

98.006

0.621
  recA Neisseria gonorrhoeae MS11

62.428

98.575

0.615
  recA Neisseria gonorrhoeae strain FA1090

62.428

98.575

0.615
  recA Neisseria gonorrhoeae MS11

62.428

98.575

0.615
  recA Lactococcus lactis subsp. cremoris KW2

65.653

93.732

0.615
  recA Helicobacter pylori strain NCTC11637

62.139

98.575

0.613
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.046

93.732

0.61
  recA Helicobacter pylori 26695

61.85

98.575

0.61
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.217

91.738

0.598
  recA Vibrio cholerae strain A1552

65.217

91.738

0.598
  recA Pseudomonas stutzeri DSM 10701

62.883

92.877

0.584
  recA Glaesserella parasuis strain SC1401

59.13

98.291

0.581
  recA Ralstonia pseudosolanacearum GMI1000

64.65

89.459

0.578
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.909

94.017

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.392

90.028

0.553