Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PYH63_RS08585 Genome accession   NZ_CP118788
Coordinates   1750921..1751964 (-) Length   347 a.a.
NCBI ID   WP_096597866.1    Uniprot ID   A0AAX0QS84
Organism   Staphylococcus delphini strain 7070     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1745921..1756964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH63_RS08565 (PYH63_08525) - 1746004..1748178 (-) 2175 WP_353421174.1 heavy metal translocating P-type ATPase -
  PYH63_RS08570 (PYH63_08530) - 1748162..1748542 (-) 381 WP_096597864.1 metalloregulator ArsR/SmtB family transcription factor -
  PYH63_RS08575 (PYH63_08535) - 1748741..1748959 (+) 219 WP_096540850.1 hypothetical protein -
  PYH63_RS08580 (PYH63_08540) rny 1749083..1750642 (-) 1560 WP_019165445.1 ribonuclease Y -
  PYH63_RS08585 (PYH63_08545) recA 1750921..1751964 (-) 1044 WP_096597866.1 recombinase RecA Machinery gene
  PYH63_RS08590 (PYH63_08550) - 1752183..1752945 (-) 763 Protein_1662 sulfite exporter TauE/SafE family protein -
  PYH63_RS08595 (PYH63_08555) cstR 1752945..1753205 (-) 261 WP_096554933.1 persulfide-sensing transcriptional repressor CstR -
  PYH63_RS08600 (PYH63_08560) - 1753343..1754410 (+) 1068 WP_353421175.1 DsrE/DsrF/DrsH-like family protein -
  PYH63_RS08605 (PYH63_08565) cstB 1754440..1755774 (+) 1335 WP_262630651.1 persulfide dioxygenase-sulfurtransferase CstB -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37938.04 Da        Isoelectric Point: 5.1086

>NTDB_id=795261 PYH63_RS08585 WP_096597866.1 1750921..1751964(-) (recA) [Staphylococcus delphini strain 7070]
MDNERQKALDTVIKNMEKSFGKGAVMKLGENKDRRVSSVSSGSVTLDHALGVGGYPKGRIIEVYGPESSGKTTVALHAIA
EVQKNGGIAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIIIVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSAAISKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFKVAEVDIMYGKGISRQGELIDLGVQYEIVDKSGAWYSYNGERMGQGKENVKQFLLENPKLEDEIDR
KLREKLGIFDGDVEEAEQEETQTLFDE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=795261 PYH63_RS08585 WP_096597866.1 1750921..1751964(-) (recA) [Staphylococcus delphini strain 7070]
TTGGATAATGAACGTCAAAAAGCGCTAGATACAGTAATTAAAAATATGGAAAAATCATTTGGTAAAGGTGCCGTAATGAA
ACTGGGTGAGAATAAAGATCGCCGTGTTTCAAGTGTTTCAAGTGGTTCGGTAACACTAGACCATGCATTAGGGGTTGGCG
GCTATCCTAAAGGTCGTATCATCGAAGTTTATGGCCCCGAAAGTTCTGGTAAAACTACAGTTGCTTTACATGCCATTGCT
GAAGTACAAAAAAATGGCGGTATTGCTGCATTTATTGATGCCGAACACGCACTCGATCCAGTTTACGCTGAAGCATTAGG
TGTAGATATTGATAACTTATACCTTTCACAACCAGACCACGGTGAACAAGGGCTTGAAATTGCAGAGGCGTTTGTCAGAA
GTGGCGCAGTGGATATTATCATTGTCGACTCAGTTGCGGCATTGACACCTAAAGCAGAAATCGAAGGCGAGATGGGTGAT
ACACACGTTGGCTTACAGGCGCGTCTCATGTCTCAAGCATTACGCAAATTATCTGCAGCGATTTCAAAATCAAAAACGAC
AGCTATTTTTATTAACCAAATCCGTGAAAAGGTAGGCGTGATGTTCGGTAACCCTGAAACGACACCAGGTGGGCGCGCAT
TAAAATTCTACAGCTCAGTTCGTTTAGAAGTGCGTCGTGCCGAGCAATTAAAACAAGGTCAAGATATCGTCGGTAACCGT
ACTAAAATCAAAGTCGTTAAAAACAAAGTCGCACCACCATTCAAAGTGGCAGAAGTTGATATCATGTATGGTAAAGGGAT
TTCACGTCAAGGTGAGCTTATCGACTTAGGTGTTCAATATGAAATTGTAGACAAGTCAGGTGCATGGTATTCATACAATG
GTGAGCGTATGGGGCAAGGTAAAGAAAACGTTAAACAATTTTTATTAGAAAACCCTAAACTTGAAGATGAAATCGACCGT
AAATTACGCGAAAAACTTGGCATTTTTGATGGTGACGTGGAAGAGGCTGAACAAGAAGAAACACAAACGCTTTTCGATGA
ATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.38

93.948

0.718
  recA Latilactobacillus sakei subsp. sakei 23K

69.54

100

0.697
  recA Streptococcus mutans UA159

66.189

100

0.666
  recA Streptococcus pyogenes NZ131

69.909

94.813

0.663
  recA Streptococcus pneumoniae Rx1

65.517

100

0.657
  recA Streptococcus pneumoniae D39

65.517

100

0.657
  recA Streptococcus pneumoniae R6

65.517

100

0.657
  recA Streptococcus pneumoniae TIGR4

65.517

100

0.657
  recA Streptococcus mitis NCTC 12261

65.306

98.847

0.646
  recA Streptococcus mitis SK321

65.116

99.135

0.646
  recA Lactococcus lactis subsp. cremoris KW2

65.861

95.389

0.628
  recA Acinetobacter baumannii D1279779

62.356

100

0.625
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.463

98.271

0.614
  recA Acinetobacter baylyi ADP1

64.724

93.948

0.608
  recA Neisseria gonorrhoeae MS11

61.404

98.559

0.605
  recA Neisseria gonorrhoeae MS11

61.404

98.559

0.605
  recA Neisseria gonorrhoeae strain FA1090

61.404

98.559

0.605
  recA Ralstonia pseudosolanacearum GMI1000

63.497

93.948

0.597
  recA Vibrio cholerae strain A1552

62.883

93.948

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.883

93.948

0.591
  recA Helicobacter pylori 26695

62.195

94.524

0.588
  recA Helicobacter pylori strain NCTC11637

61.89

94.524

0.585
  recA Pseudomonas stutzeri DSM 10701

61.656

93.948

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.121

95.389

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.069

91.931

0.571
  recA Glaesserella parasuis strain SC1401

60.991

93.084

0.568