Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ORD17_RS12365 Genome accession   NZ_CP118747
Coordinates   2437785..2438825 (-) Length   346 a.a.
NCBI ID   WP_308388787.1    Uniprot ID   -
Organism   Acidithiobacillus sp. AMEEHan     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2432785..2443825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORD17_RS12345 - 2433360..2433911 (-) 552 WP_308388783.1 sigma-70 family RNA polymerase sigma factor -
  ORD17_RS12350 - 2434062..2434646 (+) 585 WP_308388784.1 hypothetical protein -
  ORD17_RS12355 alaS 2434661..2437300 (-) 2640 WP_308388785.1 alanine--tRNA ligase -
  ORD17_RS12360 - 2437330..2437788 (-) 459 WP_308388786.1 regulatory protein RecX -
  ORD17_RS12365 recA 2437785..2438825 (-) 1041 WP_308388787.1 recombinase RecA Machinery gene
  ORD17_RS12370 - 2438859..2439719 (-) 861 WP_308388788.1 CinA family protein -
  ORD17_RS12375 thiL 2439709..2440713 (-) 1005 WP_308388789.1 thiamine-phosphate kinase -
  ORD17_RS12380 gluQRS 2440804..2441670 (+) 867 WP_308388790.1 tRNA glutamyl-Q(34) synthetase GluQRS -
  ORD17_RS12385 - 2441672..2442283 (+) 612 WP_308388791.1 DUF4124 domain-containing protein -
  ORD17_RS12390 - 2442362..2443618 (-) 1257 WP_308388792.1 type II secretion system F family protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 36953.20 Da        Isoelectric Point: 5.4985

>NTDB_id=794970 ORD17_RS12365 WP_308388787.1 2437785..2438825(-) (recA) [Acidithiobacillus sp. AMEEHan]
MDDQRSKALAAALSQIDRQFGKGAIMRLGEQSAIKDIAVYSTGSLGLDLALGVGGLPRGRIVEIYGPESSGKTTLTLHAI
ASCQAAGGTAAFIDAEHALDPTYAQKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVVDSVAALTPKAEIEGEMG
DSHVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKKGDEVLGN
DTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFDILEKSGAWYSYGSERIGQGKDNARQYLKEHPEVAKAIE
DKVRAAALGHPLAFAEEVPGLAEAEG

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=794970 ORD17_RS12365 WP_308388787.1 2437785..2438825(-) (recA) [Acidithiobacillus sp. AMEEHan]
ATGGATGATCAACGGAGCAAGGCGCTGGCTGCGGCCCTGTCGCAAATCGACCGCCAGTTTGGCAAGGGTGCCATCATGCG
CCTGGGTGAGCAGAGCGCCATCAAGGACATTGCCGTCTATTCCACGGGTTCCCTGGGGCTGGATCTGGCCTTGGGGGTCG
GTGGACTGCCGCGCGGGCGCATCGTCGAGATCTATGGGCCGGAATCCTCCGGCAAAACGACCCTGACGCTGCACGCCATC
GCCAGTTGTCAAGCCGCCGGCGGTACGGCGGCCTTCATCGACGCCGAACATGCCCTGGATCCCACTTACGCGCAGAAGCT
CGGGGTGGATCTCGAAAATCTCCTCATCTCGCAGCCGGATACCGGCGAACAGGCACTGGAAATTGCCGATATGCTGGTGC
GCTCCGGTGCCGTCGATCTCATCGTCGTGGATTCCGTGGCCGCCCTGACGCCCAAAGCGGAAATTGAGGGCGAGATGGGC
GATTCGCATGTGGGTCTGCAGGCGCGGCTGATGAGTCAGGCCCTGCGCAAGCTCACTGCCAACATCTCGCGTACCAATAC
CCTGGTCATTTTCATCAATCAGATTCGTATGAAAATCGGCGTCATGTACGGCAGCCCGGAAACCACCACCGGCGGCAACG
CCCTCAAGTTTTACGCCTCCGTGCGCTTGGATATCCGCCGTATCGGCGCGATCAAGAAGGGCGACGAAGTCCTTGGCAAC
GATACCCGGGTGAAGGTGGTCAAGAACAAGGTGGCCCCACCGTTCCGCGAGGCGGAGTTCGCCATCTATTACGGCGAGGG
AATTTCGCGTCTGTCGGAGCTGGTCGATCTGGGGGTCAAGTTCGACATTCTGGAAAAGAGCGGGGCCTGGTACAGTTACG
GCAGCGAGCGGATCGGGCAAGGTAAGGACAATGCCCGTCAGTATCTGAAAGAGCATCCGGAAGTGGCGAAGGCCATTGAG
GACAAGGTGCGCGCCGCGGCCCTGGGCCACCCGCTGGCCTTTGCCGAAGAGGTGCCGGGGCTGGCCGAAGCCGAAGGGTG
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

74.154

93.931

0.697
  recA Neisseria gonorrhoeae MS11

74.154

93.931

0.697
  recA Neisseria gonorrhoeae strain FA1090

74.154

93.931

0.697
  recA Ralstonia pseudosolanacearum GMI1000

73.62

94.22

0.694
  recA Acinetobacter baylyi ADP1

72.866

94.798

0.691
  recA Pseudomonas stutzeri DSM 10701

72.256

94.798

0.685
  recA Acinetobacter baumannii D1279779

71.646

94.798

0.679
  recA Vibrio cholerae strain A1552

71.037

94.798

0.673
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.037

94.798

0.673
  recA Glaesserella parasuis strain SC1401

70.213

95.087

0.668
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.854

94.798

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.5

92.486

0.624
  recA Helicobacter pylori strain NCTC11637

65.749

94.509

0.621
  recA Bacillus subtilis subsp. subtilis str. 168

66.875

92.486

0.618
  recA Helicobacter pylori 26695

65.443

94.509

0.618
  recA Latilactobacillus sakei subsp. sakei 23K

65.741

93.642

0.616
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

65.432

93.642

0.613
  recA Streptococcus pneumoniae TIGR4

63.19

94.22

0.595
  recA Streptococcus pneumoniae Rx1

63.19

94.22

0.595
  recA Streptococcus pneumoniae D39

63.19

94.22

0.595
  recA Streptococcus pneumoniae R6

63.19

94.22

0.595
  recA Streptococcus pyogenes NZ131

62.883

94.22

0.592
  recA Streptococcus mutans UA159

62.577

94.22

0.59
  recA Streptococcus mitis SK321

62.769

93.931

0.59
  recA Streptococcus mitis NCTC 12261

62.462

93.931

0.587
  recA Lactococcus lactis subsp. cremoris KW2

61.774

94.509

0.584