Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Herbaro_RS03350 Genome accession   NZ_CP118632
Coordinates   754739..755794 (+) Length   351 a.a.
NCBI ID   WP_275012431.1    Uniprot ID   -
Organism   Herbaspirillum sp. WKF16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 749739..760794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Herbaro_RS03330 (Herbaro_03330) - 750113..750991 (-) 879 WP_275012427.1 ABC transporter permease -
  Herbaro_RS03335 (Herbaro_03335) - 751005..751982 (-) 978 WP_275012428.1 aliphatic sulfonate ABC transporter substrate-binding protein -
  Herbaro_RS03340 (Herbaro_03340) - 752132..752737 (-) 606 WP_275012429.1 HAMP domain-containing sensor histidine kinase -
  Herbaro_RS03345 (Herbaro_03345) - 752740..754368 (-) 1629 WP_275012430.1 tetratricopeptide repeat-containing response regulator -
  Herbaro_RS03350 (Herbaro_03350) recA 754739..755794 (+) 1056 WP_275012431.1 recombinase RecA Machinery gene
  Herbaro_RS03355 (Herbaro_03355) recX 756028..756492 (+) 465 WP_275012432.1 recombination regulator RecX -
  Herbaro_RS03360 (Herbaro_03360) sucC 756985..758151 (+) 1167 WP_275012433.1 ADP-forming succinate--CoA ligase subunit beta -
  Herbaro_RS03365 (Herbaro_03365) sucD 758251..759132 (+) 882 WP_079216758.1 succinate--CoA ligase subunit alpha -
  Herbaro_RS03370 (Herbaro_03370) - 759281..760006 (+) 726 WP_275012434.1 TerC family protein -
  Herbaro_RS03375 (Herbaro_03375) - 760225..760734 (+) 510 WP_275012435.1 pilin -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37457.54 Da        Isoelectric Point: 5.0660

>NTDB_id=794110 Herbaro_RS03350 WP_275012431.1 754739..755794(+) (recA) [Herbaspirillum sp. WKF16]
MDDKKAANNSEKGKALAAALAQIEKQFGKGSVMRMEDGSVAEEIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT
TLTLQAIAEMQKLGGTCAFIDAEHALDVTYAQKLGVNLTDLLISQPDTGEQALEITDALVRSGAVDLIVVDSVAALTPKA
EIEGDMGDSLPGLQARLMSQALRKLTGSINRTNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKS
GDEVIGSETRVKVVKNKVAPPFREAHFDILYGEGTSREGEILDLGSEHKVVEKSGAWYSYNGEKIGQGKDNARNFLKERP
ELAREIENKVRIALGVPELAGGEAQAQEQAS

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=794110 Herbaro_RS03350 WP_275012431.1 754739..755794(+) (recA) [Herbaspirillum sp. WKF16]
ATGGACGACAAAAAAGCTGCGAACAACTCTGAAAAGGGTAAAGCGCTGGCCGCCGCGTTGGCGCAGATTGAAAAGCAGTT
TGGCAAGGGCTCCGTGATGCGCATGGAGGACGGCAGCGTCGCCGAGGAAATCCAGGTCGTGTCGACCGGCTCGCTGGGGC
TGGACATCGCCCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTCGTCGAGATCTACGGCCCGGAGTCGTCGGGCAAGACC
ACGCTGACCCTGCAAGCCATTGCCGAAATGCAAAAACTGGGCGGCACCTGCGCCTTCATCGACGCCGAGCACGCGCTGGA
TGTCACCTACGCGCAAAAGCTGGGCGTCAACCTGACCGACCTGCTGATCTCGCAGCCCGACACCGGCGAACAGGCGCTTG
AAATCACCGACGCCCTGGTGCGCTCGGGCGCGGTCGACCTGATCGTGGTCGACTCCGTGGCGGCGCTCACGCCCAAGGCT
GAAATCGAAGGCGACATGGGCGACTCGCTGCCCGGCCTGCAGGCCCGCCTGATGTCGCAGGCGCTGCGCAAGCTGACCGG
CAGCATCAACCGCACCAATACCACCGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAACCCGG
AAACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCCGTGCGCCTGGACATCCGCCGCACCGGTTCGATCAAGTCC
GGCGACGAAGTCATCGGCAGCGAAACCCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCCGTTCCGCGAAGCGCACTT
CGATATCCTGTATGGAGAAGGCACCTCGCGCGAAGGCGAGATCCTGGACCTCGGCTCCGAGCACAAGGTGGTGGAGAAGT
CCGGCGCCTGGTACAGCTACAACGGCGAGAAGATCGGCCAGGGCAAGGACAACGCGCGCAACTTCCTGAAGGAGCGCCCG
GAACTGGCGCGCGAGATCGAGAACAAGGTCCGCATCGCGCTGGGCGTGCCCGAGCTGGCCGGTGGCGAGGCCCAGGCGCA
AGAGCAAGCTTCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

84.821

95.726

0.812
  recA Pseudomonas stutzeri DSM 10701

73.926

92.877

0.687
  recA Neisseria gonorrhoeae MS11

73.171

93.447

0.684
  recA Neisseria gonorrhoeae MS11

73.171

93.447

0.684
  recA Neisseria gonorrhoeae strain FA1090

73.171

93.447

0.684
  recA Vibrio cholerae strain A1552

72.424

94.017

0.681
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.424

94.017

0.681
  recA Glaesserella parasuis strain SC1401

73.231

92.593

0.678
  recA Acinetobacter baylyi ADP1

71.601

94.302

0.675
  recA Acinetobacter baumannii D1279779

71.517

92.023

0.658
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.683

93.447

0.632
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.431

97.721

0.63
  recA Helicobacter pylori 26695

64.565

94.872

0.613
  recA Bacillus subtilis subsp. subtilis str. 168

65.749

93.162

0.613
  recA Helicobacter pylori strain NCTC11637

64.264

94.872

0.61
  recA Streptococcus mutans UA159

63.363

94.872

0.601
  recA Streptococcus pyogenes NZ131

63.636

94.017

0.598
  recA Streptococcus pneumoniae TIGR4

62.952

94.587

0.595
  recA Streptococcus pneumoniae D39

62.952

94.587

0.595
  recA Streptococcus pneumoniae R6

62.952

94.587

0.595
  recA Streptococcus pneumoniae Rx1

62.952

94.587

0.595
  recA Streptococcus mitis SK321

62.651

94.587

0.593
  recA Streptococcus mitis NCTC 12261

62.651

94.587

0.593
  recA Latilactobacillus sakei subsp. sakei 23K

63.222

93.732

0.593
  recA Lactococcus lactis subsp. cremoris KW2

61.176

96.866

0.593
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.736

92.877

0.564