Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PVV54_RS20180 Genome accession   NZ_CP118607
Coordinates   4522777..4523844 (-) Length   355 a.a.
NCBI ID   WP_274906929.1    Uniprot ID   -
Organism   Pseudomonas sp. PSKL.D1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4517777..4528844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVV54_RS20145 (PVV54_20145) - 4518088..4518450 (-) 363 WP_027595832.1 diacylglycerol kinase -
  PVV54_RS20150 (PVV54_20150) erdR 4518525..4519175 (-) 651 WP_274906923.1 response regulator transcription factor ErdR -
  PVV54_RS20155 (PVV54_20155) - 4519356..4520066 (-) 711 WP_274906924.1 tRNA-uridine aminocarboxypropyltransferase -
  PVV54_RS20160 (PVV54_20160) - 4520260..4520679 (+) 420 WP_274906925.1 quorum-sensing-regulated virulence factor family protein -
  PVV54_RS20165 (PVV54_20165) - 4520680..4520883 (-) 204 WP_274906926.1 hypothetical protein -
  PVV54_RS20170 (PVV54_20170) - 4521153..4522271 (+) 1119 WP_274906927.1 LOG family protein -
  PVV54_RS20175 (PVV54_20175) recX 4522285..4522755 (-) 471 WP_274906928.1 recombination regulator RecX -
  PVV54_RS20180 (PVV54_20180) recA 4522777..4523844 (-) 1068 WP_274906929.1 recombinase RecA Machinery gene
  PVV54_RS20185 (PVV54_20185) - 4523948..4524430 (-) 483 WP_274906930.1 CinA family protein -
  PVV54_RS20190 (PVV54_20190) mutS 4524577..4527150 (+) 2574 WP_274906931.1 DNA mismatch repair protein MutS -
  PVV54_RS20195 (PVV54_20195) fdxA 4527292..4527615 (+) 324 WP_051097441.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37442.74 Da        Isoelectric Point: 5.5300

>NTDB_id=793939 PVV54_RS20180 WP_274906929.1 4522777..4523844(-) (recA) [Pseudomonas sp. PSKL.D1]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQGIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKSGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYSYQGNKIGQGKANAAKYLQENPAIGAEIEK
QIRDKLLNAGAVAAAGKAAAADADAGDLADADAGY

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=793939 PVV54_RS20180 WP_274906929.1 4522777..4523844(-) (recA) [Pseudomonas sp. PSKL.D1]
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAAATCGAACGCCAATTCGGCAAGGGCGCCGTCATGCG
CATGGGCGACCATGAGCGTCAAGGTATTCCTGCCATCTCCACGGGTTCCCTGGGCCTGGACATCGCCCTCGGCATCGGCG
GCCTGCCAAAAGGCCGTATCGTCGAGATCTACGGCCCGGAGTCTTCCGGTAAAACCACGCTGACCCTGTCGGTGATCGCC
GAAGCCCAGAAGAGCGGTGCCACCTGCGCGTTCGTCGACGCCGAACACGCGCTGGACCCGGAGTACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTCTCGCAGCCGGACACCGGCGAACAGGCGCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCTGTTGACGTCATCATCGTCGACTCCGTGGCGGCCCTGGTACCGAAGGCCGAGATCGAAGGCGAAATGGGTGAC
ATGCACGTCGGCCTGCAGGCCCGTCTGATGTCCCAGGCGCTGCGTAAGATTACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGTAGCCCGGAAACCACCACCGGTGGTAACGCCC
TGAAGTTCTACGCCTCGGTGCGTCTGGACATCCGTCGCACTGGCGCGGTCAAGGAAGGCGACGAGGTGGTCGGTAGCGAA
ACCCGCGTCAAAATCGTCAAGAACAAGGTCTCGCCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGTAT
CTACCGTAACGGCGAAATCATCGACCTGGGCGTGTCGCAGGGCCTGGTGGAAAAGTCGGGTGCCTGGTACAGCTACCAAG
GCAACAAAATCGGTCAGGGCAAGGCAAACGCCGCCAAGTACCTGCAAGAGAACCCGGCCATTGGCGCAGAGATCGAAAAG
CAGATCCGCGACAAGCTGCTTAACGCTGGCGCCGTTGCTGCCGCTGGCAAAGCCGCTGCTGCAGACGCAGATGCGGGTGA
CCTGGCTGATGCCGACGCCGGTTATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

89.489

99.155

0.887
  recA Acinetobacter baylyi ADP1

74.561

96.338

0.718
  recA Acinetobacter baumannii D1279779

74.85

94.085

0.704
  recA Vibrio cholerae strain A1552

74.39

92.394

0.687
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.39

92.394

0.687
  recA Glaesserella parasuis strain SC1401

70.468

96.338

0.679
  recA Ralstonia pseudosolanacearum GMI1000

71.045

94.366

0.67
  recA Neisseria gonorrhoeae MS11

71.296

91.268

0.651
  recA Neisseria gonorrhoeae MS11

71.296

91.268

0.651
  recA Neisseria gonorrhoeae strain FA1090

71.296

91.268

0.651
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.393

94.648

0.6
  recA Helicobacter pylori strain NCTC11637

62.997

92.113

0.58
  recA Helicobacter pylori 26695

62.385

92.113

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

61.631

93.239

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.631

93.239

0.575
  recA Streptococcus pyogenes NZ131

55.462

100

0.558
  recA Streptococcus mitis NCTC 12261

56.196

97.746

0.549
  recA Streptococcus pneumoniae R6

58.896

91.831

0.541
  recA Streptococcus pneumoniae TIGR4

58.896

91.831

0.541
  recA Streptococcus pneumoniae Rx1

58.896

91.831

0.541
  recA Streptococcus pneumoniae D39

58.896

91.831

0.541
  recA Streptococcus mutans UA159

58.769

91.549

0.538
  recA Latilactobacillus sakei subsp. sakei 23K

59.19

90.423

0.535
  recA Streptococcus mitis SK321

58.514

90.986

0.532
  recA Lactococcus lactis subsp. cremoris KW2

56.966

90.986

0.518
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.135

91.831

0.515