Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PWF71_RS09540 Genome accession   NZ_CP118606
Coordinates   1994323..1995372 (-) Length   349 a.a.
NCBI ID   WP_017830899.1    Uniprot ID   A0AAJ5V6M9
Organism   Microbacterium maritypicum strain B1075     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1989323..2000372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWF71_RS09515 (PWF71_09515) dapF 1989480..1990352 (-) 873 WP_210698430.1 diaminopimelate epimerase -
  PWF71_RS09520 (PWF71_09520) - 1990383..1990913 (-) 531 WP_017830895.1 dihydrofolate reductase family protein -
  PWF71_RS09525 (PWF71_09525) miaA 1990951..1991862 (-) 912 WP_275092700.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  PWF71_RS09530 (PWF71_09530) miaB 1991859..1993406 (-) 1548 WP_210698427.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  PWF71_RS09535 (PWF71_09535) - 1993454..1994323 (-) 870 WP_210698426.1 regulatory protein RecX -
  PWF71_RS09540 (PWF71_09540) recA 1994323..1995372 (-) 1050 WP_017830899.1 recombinase RecA Machinery gene
  PWF71_RS09545 (PWF71_09545) - 1995642..1995866 (-) 225 WP_017830900.1 DUF3046 domain-containing protein -
  PWF71_RS09550 (PWF71_09550) - 1995885..1996193 (-) 309 WP_017830901.1 helix-turn-helix domain-containing protein -
  PWF71_RS09555 (PWF71_09555) - 1996335..1996820 (-) 486 WP_017830902.1 CinA family protein -
  PWF71_RS09560 (PWF71_09560) pgsA 1996817..1997392 (-) 576 WP_017830903.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PWF71_RS09565 (PWF71_09565) - 1997392..2000127 (-) 2736 WP_017830904.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37058.35 Da        Isoelectric Point: 5.5016

>NTDB_id=793924 PWF71_RS09540 WP_017830899.1 1994323..1995372(-) (recA) [Microbacterium maritypicum strain B1075]
MPSPADREKSLETALAQIDRQFGKGSVMRLGSDERAPVAVIPTGSIALDVALGVGGLPRGRIVEIYGPESSGKTTLTLHA
IANAQRAGGIAAFIDAEHALDPDYAAKLGVDIDALLVSQPDTGEQALEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEM
GDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTDAVG
NRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEHAIVKKSGSWYTYDGDQLGQGKENARTFLLNNPDIALAI
ETQIKQKLGIGGAAAVPAAADELAERRPA

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=793924 PWF71_RS09540 WP_017830899.1 1994323..1995372(-) (recA) [Microbacterium maritypicum strain B1075]
ATGCCATCACCCGCCGACCGCGAGAAGTCCCTCGAGACCGCCCTCGCCCAGATCGACCGCCAGTTCGGAAAGGGCTCGGT
CATGCGGCTGGGCAGCGATGAGCGTGCCCCCGTGGCCGTCATCCCCACCGGCTCCATCGCCCTCGACGTCGCCCTCGGCG
TCGGAGGTCTCCCGCGTGGTCGAATCGTCGAGATCTACGGACCGGAGTCCTCGGGTAAGACGACTCTCACCCTGCACGCG
ATCGCGAACGCTCAGCGCGCCGGCGGCATCGCCGCCTTCATCGACGCCGAGCACGCGCTCGACCCGGATTACGCCGCGAA
GCTCGGTGTCGACATCGACGCGCTTCTGGTCTCCCAGCCCGACACCGGTGAGCAGGCGCTCGAGATCGCCGACATGCTCG
TGCGCTCGGGGGCCATCGACCTCATCGTCATCGACTCCGTGGCCGCGCTCGTCCCTCGCGCCGAGATCGAGGGTGAGATG
GGCGACTCGCACGTGGGTCTGCAGGCACGACTCATGTCACAGGCGCTTCGTAAGCTCACGGGTGGTCTGAACCAGACCAA
CACCACGATGATCTTCATCAACCAGCTTCGCGAGAAGATCGGTGTGTTCTTCGGCTCGCCCGAGACCACCGCCGGTGGTA
AGGCGCTGAAGTTCTACGCCTCGGTCCGTATGGACATCCGTCGTATCGAGACGCTGAAGGATGGCACCGACGCGGTCGGA
AACCGCACCAGGGTGAAGGTGGTGAAGAACAAGATGGCACCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCGT
CGGCATCTCCCGCGAGGGCAGCCTGATCGACTTCGGTGTCGAGCACGCCATCGTGAAGAAGTCGGGCTCGTGGTACACCT
ACGACGGAGACCAGCTGGGCCAGGGCAAGGAGAACGCGCGAACGTTCCTGCTCAACAACCCCGACATCGCGCTGGCCATC
GAGACGCAGATCAAGCAGAAGCTCGGCATCGGCGGCGCGGCTGCTGTGCCGGCGGCTGCAGACGAGCTCGCCGAGCGTCG
TCCGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.272

96.848

0.642
  recA Acinetobacter baylyi ADP1

65.294

97.421

0.636
  recA Ralstonia pseudosolanacearum GMI1000

67.284

92.837

0.625
  recA Acinetobacter baumannii D1279779

64.688

96.562

0.625
  recA Bacillus subtilis subsp. subtilis str. 168

66.258

93.41

0.619
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.254

92.55

0.613
  recA Vibrio cholerae strain A1552

66.254

92.55

0.613
  recA Neisseria gonorrhoeae MS11

65.644

93.41

0.613
  recA Neisseria gonorrhoeae MS11

65.644

93.41

0.613
  recA Neisseria gonorrhoeae strain FA1090

65.644

93.41

0.613
  recA Streptococcus mitis SK321

60.116

99.14

0.596
  recA Streptococcus mitis NCTC 12261

60.116

99.14

0.596
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.415

93.983

0.596
  recA Latilactobacillus sakei subsp. sakei 23K

61.357

97.135

0.596
  recA Helicobacter pylori strain NCTC11637

60.641

98.281

0.596
  recA Helicobacter pylori 26695

60.641

98.281

0.596
  recA Glaesserella parasuis strain SC1401

60.767

97.135

0.59
  recA Streptococcus pneumoniae Rx1

61.212

94.556

0.579
  recA Streptococcus pneumoniae D39

61.212

94.556

0.579
  recA Streptococcus pneumoniae R6

61.212

94.556

0.579
  recA Streptococcus pneumoniae TIGR4

61.212

94.556

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.79

94.269

0.573
  recA Streptococcus mutans UA159

60.486

94.269

0.57
  recA Lactococcus lactis subsp. cremoris KW2

60

94.556

0.567
  recA Streptococcus pyogenes NZ131

60.061

93.983

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.688

91.691

0.547