Detailed information NTG0079370

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: HHSLTHF2_RS03900
• Genome accession: NZ_AP022843
• Coordinates: 801440..802501 (+)
• Length: 353 a.a.
• NCBI ID: WP_125745767.1
• Uniprot ID: A0AAP9ZH67
• Organism: Halomonas hydrothermalis strain Slthf2
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	803304..803885	801440..802501	flank	803

Gene organization within MGE regions

Location: 801440..803885

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HHSLTHF2_RS03900 (HHSLTHF2_07630)	recA	801440..802501 (+)	1062	WP_125745767.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 353 a.a.
• Molecular weight: 37850.16 Da
• Isoelectric Point: 4.9292

>NTDB_id=79370 HHSLTHF2_RS03900 WP_125745767.1 801440..802501(+) (recA) [Halomonas hydrothermalis strain Slthf2]
MAQDDNRTKALNAALSQIDRQFGKGTVMRLGDAPRVIMPSVSTGSLGLDIALGIGGLPFGRVCEIYGPESSGKTTLTLSV
IAQAQKQGKVCAFVDAEHALDPSYAEKLGVNLDDLLVSQPDTGEQALEITDMLVRSGGVDVIVIDSVAALTPRAEIEGEM
GDSHVGLQARLMSQALRKITGNIKNANCLVMFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSVKSGDEVTG
NETRVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVIDLGVQCSLVDKAGAWYSYKGKKIGQGKANAAQYLEEHPETMEEI
EAQIRAQLLAPPDAKKEEAPEVDVAAESDDDLL

Nucleotide

• Length: 1062 bp

>NTDB_id=79370 HHSLTHF2_RS03900 WP_125745767.1 801440..802501(+) (recA) [Halomonas hydrothermalis strain Slthf2]
ATGGCTCAGGATGACAACCGCACCAAAGCGCTAAATGCTGCACTTAGCCAGATTGATCGCCAGTTTGGTAAGGGAACCGT
TATGCGCCTTGGCGATGCGCCGCGCGTGATAATGCCGTCTGTTTCCACCGGTTCATTGGGGCTTGATATTGCGCTTGGTA
TCGGCGGGCTGCCGTTTGGGCGCGTATGTGAAATTTATGGCCCCGAGTCATCAGGTAAAACGACGCTGACTCTGTCAGTC
ATTGCGCAGGCGCAAAAGCAGGGCAAAGTCTGTGCGTTCGTCGATGCAGAGCACGCTCTGGACCCAAGCTATGCAGAAAA
GCTCGGAGTTAATCTCGACGACTTGCTGGTTTCCCAGCCCGATACTGGTGAGCAAGCGCTGGAGATTACCGACATGTTGG
TAAGGTCCGGCGGGGTAGATGTGATCGTGATCGACTCAGTGGCTGCATTAACGCCGCGTGCTGAAATCGAAGGTGAAATG
GGCGACTCCCACGTTGGTCTGCAAGCACGTTTAATGTCTCAGGCATTGCGTAAAATTACCGGTAATATCAAAAACGCTAA
TTGTTTAGTGATGTTTATCAACCAGATCCGCATGAAGATCGGTGTGATGTTTGGTTCGCCCGAAACCACGACCGGCGGTA
ACGCGCTTAAATTCTATTCCAGCGTGCGTCTGGATATCCGGCGTACAGGCTCCGTAAAATCGGGTGACGAAGTCACTGGT
AACGAAACCCGAGTGAAGGTAGTTAAAAATAAAGTGGCGCCGCCATTCCGTCAGGCTGAGTTCCAAATCCTCTACGGTAA
GGGGATCTACCATGCGGGTGAGGTTATTGACCTGGGCGTCCAGTGCAGCTTGGTAGACAAGGCGGGCGCGTGGTATAGCT
ACAAAGGCAAAAAAATTGGCCAGGGCAAAGCCAATGCAGCTCAGTATTTAGAAGAGCATCCTGAAACCATGGAAGAAATT
GAAGCGCAAATCCGAGCGCAACTGCTTGCTCCGCCGGATGCAAAAAAAGAAGAAGCCCCTGAGGTAGATGTCGCCGCTGA
GAGTGATGATGATTTGCTGTAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (9-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Pseudomonas stutzeri DSM 10701	79.191	98.017	0.776
recA	Acinetobacter baylyi ADP1	75.767	92.351	0.7
recA	Acinetobacter baumannii D1279779	74.54	92.351	0.688
recA	Vibrio cholerae strain A1552	70	93.484	0.654
recA	Vibrio cholerae O1 biovar El Tor strain E7946	70	93.484	0.654
recA	Neisseria gonorrhoeae MS11	71.207	91.501	0.652
recA	Neisseria gonorrhoeae MS11	71.207	91.501	0.652
recA	Neisseria gonorrhoeae strain FA1090	71.207	91.501	0.652
recA	Ralstonia pseudosolanacearum GMI1000	69.939	92.351	0.646
recA	Glaesserella parasuis strain SC1401	69.091	93.484	0.646
recA	Helicobacter pylori 26695	60.87	97.734	0.595
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.417	92.351	0.595
recA	Helicobacter pylori strain NCTC11637	60.29	97.734	0.589
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	61.012	95.184	0.581
recA	Bacillus subtilis subsp. subtilis str. 168	62.5	90.652	0.567
recA	Streptococcus pyogenes NZ131	56.534	99.717	0.564
recA	Streptococcus mitis NCTC 12261	56.857	99.15	0.564
recA	Streptococcus mitis SK321	56.571	99.15	0.561
recA	Streptococcus pneumoniae R6	59.202	92.351	0.547
recA	Latilactobacillus sakei subsp. sakei 23K	59.202	92.351	0.547
recA	Streptococcus pneumoniae Rx1	59.202	92.351	0.547
recA	Streptococcus pneumoniae D39	59.202	92.351	0.547
recA	Streptococcus pneumoniae TIGR4	59.202	92.351	0.547
recA	Streptococcus mutans UA159	57.798	92.635	0.535
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	57.846	92.068	0.533
recA	Lactococcus lactis subsp. cremoris KW2	57.099	91.785	0.524