Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NIL_RS09040 Genome accession   NZ_AP022826
Coordinates   1795111..1796145 (-) Length   344 a.a.
NCBI ID   WP_187647448.1    Uniprot ID   -
Organism   Nitrosophilus labii strain HRV44     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1790111..1801145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIL_RS09010 - 1790499..1790993 (+) 495 WP_187647443.1 YfcE family phosphodiesterase -
  NIL_RS09015 - 1791031..1791870 (+) 840 WP_187647444.1 biotin synthase -
  NIL_RS09020 - 1791863..1793020 (+) 1158 WP_187647445.1 cation:proton antiporter -
  NIL_RS09025 - 1793007..1793456 (-) 450 WP_187647446.1 AMIN domain-containing protein -
  NIL_RS09030 - 1793453..1793722 (-) 270 WP_197972079.1 phosphopyruvate hydratase -
  NIL_RS09035 eno 1793733..1794998 (-) 1266 WP_187647447.1 phosphopyruvate hydratase -
  NIL_RS09040 recA 1795111..1796145 (-) 1035 WP_187647448.1 recombinase RecA Machinery gene
  NIL_RS09045 - 1796300..1797163 (+) 864 WP_187647449.1 menaquinone biosynthesis family protein -
  NIL_RS09050 - 1797164..1797940 (+) 777 WP_187647450.1 UDP-N-acetylmuramate dehydrogenase -
  NIL_RS09055 tpx 1797995..1798510 (-) 516 WP_187647451.1 thiol peroxidase -
  NIL_RS09060 tsaD 1798647..1799636 (-) 990 WP_187648632.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  NIL_RS09065 - 1799642..1800187 (-) 546 WP_187647452.1 alpha/beta hydrolase -
  NIL_RS09070 - 1800180..1800911 (-) 732 WP_187647453.1 hypothetical protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37101.69 Da        Isoelectric Point: 4.8857

>NTDB_id=79271 NIL_RS09040 WP_187647448.1 1795111..1796145(-) (recA) [Nitrosophilus labii strain HRV44]
MDSNKAKALELAIKQIDKAFGKGALVKLGEKEIEPIAAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLALQIIA
EAQKDGGVCAFIDAEHALDVLYAKNLGVDVENLLVSQPDFGEQALDIVETIARSGAVDVIVIDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKLTGVLHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRIDVRRIATLKQGENQIGN
RVRAKVVKNKVAPPFRQAEFDIMFGEGISKEGEIVDYGVKLDIVDKSGSWFSYKDIKLGQGRENVKAYLKEHPEVAAEIE
NEIKNAMGINDSVMMVPDEEMNED

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=79271 NIL_RS09040 WP_187647448.1 1795111..1796145(-) (recA) [Nitrosophilus labii strain HRV44]
ATGGATTCAAATAAAGCAAAAGCGCTGGAACTCGCTATTAAACAGATTGATAAAGCTTTCGGAAAAGGGGCTTTAGTAAA
GCTTGGCGAAAAAGAGATTGAACCTATTGCAGCTATAAGTACAGGTTCTTTAGGACTTGATCTTGCCCTTGGAATAGGAG
GAGTTCCAAAGGGAAGAATTATAGAGATTTATGGACCGGAGAGTTCGGGAAAAACCACTTTGGCTCTTCAAATTATAGCT
GAAGCACAAAAAGATGGGGGAGTCTGCGCTTTTATAGATGCAGAACACGCTTTAGATGTTTTATATGCCAAAAATTTGGG
AGTAGATGTTGAAAACTTACTTGTTTCACAGCCAGATTTTGGTGAGCAGGCTTTAGATATTGTTGAAACTATTGCTAGAA
GCGGCGCAGTTGATGTTATAGTTATTGACTCCGTAGCCGCACTTACTCCAAAAGCCGAGATAGAAGGAGAGATGGGCGAT
AGTCACATGGGACTTCAAGCAAGGCTTATGAGTCAGGCTCTGAGAAAATTAACGGGTGTTCTACATAAAATGAATACCAC
CGTAATTTTTATAAACCAAATTCGTATGAAAATAGGTGCAATGGGTTATGGTACGCCTGAAACCACTACAGGTGGGAATG
CTTTGAAGTTTTATGCTTCAGTTAGAATAGACGTACGAAGAATTGCCACTTTAAAACAGGGTGAAAATCAGATAGGGAAT
AGAGTTAGGGCAAAAGTTGTGAAAAACAAAGTAGCTCCTCCATTTAGACAAGCGGAATTTGACATAATGTTTGGTGAAGG
AATAAGCAAAGAGGGAGAGATTGTAGATTACGGAGTAAAGCTTGATATTGTCGATAAAAGCGGCAGCTGGTTTAGTTATA
AAGACATTAAACTTGGCCAAGGAAGAGAAAACGTTAAAGCATATCTAAAAGAGCATCCTGAAGTTGCGGCTGAGATTGAA
AACGAGATAAAAAATGCTATGGGTATAAACGATAGCGTTATGATGGTACCCGATGAAGAGATGAATGAAGATTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

78.717

99.709

0.785
  recA Helicobacter pylori 26695

78.426

99.709

0.782
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.426

99.709

0.782
  recA Neisseria gonorrhoeae MS11

65.152

95.93

0.625
  recA Neisseria gonorrhoeae MS11

65.152

95.93

0.625
  recA Neisseria gonorrhoeae strain FA1090

65.152

95.93

0.625
  recA Acinetobacter baumannii D1279779

62.682

99.709

0.625
  recA Acinetobacter baylyi ADP1

62.209

100

0.622
  recA Glaesserella parasuis strain SC1401

62.463

99.128

0.619
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.664

96.802

0.616
  recA Bacillus subtilis subsp. subtilis str. 168

64.242

95.93

0.616
  recA Pseudomonas stutzeri DSM 10701

65.123

94.186

0.613
  recA Ralstonia pseudosolanacearum GMI1000

63.83

95.64

0.61
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.889

94.186

0.602
  recA Vibrio cholerae strain A1552

63.889

94.186

0.602
  recA Latilactobacillus sakei subsp. sakei 23K

58.457

97.965

0.573
  recA Lactococcus lactis subsp. cremoris KW2

58.859

96.802

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.877

94.186

0.564
  recA Streptococcus pneumoniae R6

57.958

96.802

0.561
  recA Streptococcus pneumoniae TIGR4

57.958

96.802

0.561
  recA Streptococcus pneumoniae D39

57.958

96.802

0.561
  recA Streptococcus pneumoniae Rx1

57.958

96.802

0.561
  recA Streptococcus mitis SK321

57.658

96.802

0.558
  recA Streptococcus pyogenes NZ131

57.927

95.349

0.552
  recA Streptococcus mitis NCTC 12261

57.057

96.802

0.552
  recA Streptococcus mutans UA159

55.927

95.64

0.535

Multiple sequence alignment