Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PVT70_RS12655 Genome accession   NZ_CP118440
Coordinates   2709612..2710673 (+) Length   353 a.a.
NCBI ID   WP_044255092.1    Uniprot ID   A0AAW9M4I5
Organism   Citrobacter amalonaticus strain DC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2704612..2715673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVT70_RS12625 (PVT70_12590) srlD 2704834..2705613 (-) 780 WP_042999607.1 sorbitol-6-phosphate dehydrogenase -
  PVT70_RS12630 (PVT70_12595) srlB 2705624..2705986 (-) 363 WP_061069687.1 PTS glucitol/sorbitol transporter subunit IIA -
  PVT70_RS12635 (PVT70_12600) - 2705998..2706981 (-) 984 WP_042999609.1 PTS glucitol/sorbitol transporter subunit IIB -
  PVT70_RS12640 (PVT70_12605) srlA 2706978..2707541 (-) 564 WP_042999610.1 PTS glucitol/sorbitol transporter subunit IIC -
  PVT70_RS12645 (PVT70_12610) mltB 2707811..2708890 (+) 1080 WP_042999611.1 lytic murein transglycosylase B -
  PVT70_RS12650 (PVT70_12615) pncC 2709034..2709531 (+) 498 WP_044266604.1 nicotinamide-nucleotide amidase -
  PVT70_RS12655 (PVT70_12620) recA 2709612..2710673 (+) 1062 WP_044255092.1 recombinase RecA Machinery gene
  PVT70_RS12660 (PVT70_12625) recX 2710789..2711289 (+) 501 WP_061069688.1 recombination regulator RecX -
  PVT70_RS12665 (PVT70_12630) alaS 2711418..2714045 (+) 2628 WP_061069689.1 alanine--tRNA ligase -
  PVT70_RS12670 (PVT70_12635) csrA 2714286..2714471 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37959.37 Da        Isoelectric Point: 4.8095

>NTDB_id=792579 PVT70_RS12655 WP_044255092.1 2709612..2710673(+) (recA) [Citrobacter amalonaticus strain DC]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATTWLKDNPATAKEI
EKKVREMLLNNQDAKPDFAVDDGEGVAETNEDF

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=792579 PVT70_RS12655 WP_044255092.1 2709612..2710673(+) (recA) [Citrobacter amalonaticus strain DC]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCGCTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCTATGGATGTGGAAACGATCTCCACAGGTTCGCTTTCACTGGATATCGCGCTGGGCG
CAGGCGGCCTGCCGATGGGCCGCATCGTCGAAATCTACGGGCCGGAATCATCCGGTAAAACCACGCTGACGCTGCAGGTG
ATTGCCGCGGCGCAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCAGAACACGCGCTGGACCCGATCTATGCACGTAA
GCTGGGCGTTGATATCGACAATCTGCTCTGTTCTCAGCCGGACACCGGTGAACAGGCGCTGGAAATCTGTGATGCGCTGG
CGCGTTCTGGCGCTGTCGACGTTATCGTTGTTGACTCCGTAGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGTGACTCTCACATGGGCCTCGCGGCGCGTATGATGAGCCAGGCGATGCGTAAACTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACGACCGGTGGTA
ACGCACTGAAATTCTACGCTTCTGTTCGTCTGGATATCCGTCGTATTGGCGCGGTGAAAGAGGGCGATAACGTGGTGGGC
AGCGAAACCCGCGTGAAGGTGGTGAAAAACAAAATTGCGGCACCGTTTAAACAGGCTGAATTCCAGATCCTTTACGGTGA
AGGCATCAATTTCTATGGCGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATCGAGAAAGCGGGCGCCTGGTACAGCT
ACAACGGCGAGAAAATTGGTCAGGGTAAAGCGAATGCAACCACCTGGCTGAAAGACAACCCGGCGACTGCGAAGGAAATT
GAGAAGAAAGTTCGCGAAATGCTGCTCAATAACCAGGATGCCAAACCTGACTTCGCTGTTGATGACGGTGAAGGCGTTGC
GGAAACCAACGAAGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

82.081

98.017

0.805
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.081

98.017

0.805
  recA Pseudomonas stutzeri DSM 10701

73.887

95.467

0.705
  recA Acinetobacter baumannii D1279779

74.618

92.635

0.691
  recA Acinetobacter baylyi ADP1

74.312

92.635

0.688
  recA Glaesserella parasuis strain SC1401

70.909

93.484

0.663
  recA Neisseria gonorrhoeae MS11

68.405

92.351

0.632
  recA Neisseria gonorrhoeae MS11

68.405

92.351

0.632
  recA Neisseria gonorrhoeae strain FA1090

68.405

92.351

0.632
  recA Ralstonia pseudosolanacearum GMI1000

71.061

88.102

0.626
  recA Streptococcus mitis SK321

60.286

99.15

0.598
  recA Streptococcus mitis NCTC 12261

60.286

99.15

0.598
  recA Streptococcus pneumoniae R6

59.77

98.584

0.589
  recA Streptococcus pneumoniae D39

59.77

98.584

0.589
  recA Streptococcus pneumoniae Rx1

59.77

98.584

0.589
  recA Streptococcus pneumoniae TIGR4

59.77

98.584

0.589
  recA Helicobacter pylori strain NCTC11637

61.128

95.467

0.584
  recA Helicobacter pylori 26695

60.831

95.467

0.581
  recA Streptococcus pyogenes NZ131

62.769

92.068

0.578
  recA Streptococcus mutans UA159

62.462

92.068

0.575
  recA Lactococcus lactis subsp. cremoris KW2

62.539

91.501

0.572
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

90.935

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

92.068

0.567
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

94.051

0.564
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.856

92.635

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.436

90.935

0.55