Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PSR12_RS05620 Genome accession   NZ_CP118397
Coordinates   1173095..1174156 (+) Length   353 a.a.
NCBI ID   WP_274771982.1    Uniprot ID   -
Organism   Lysinibacillus sp. G01H     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1168095..1179156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR12_RS05595 (PSR12_05595) - 1168826..1169083 (+) 258 WP_004224939.1 DUF3243 domain-containing protein -
  PSR12_RS05600 (PSR12_05600) - 1169300..1170085 (+) 786 WP_026023397.1 DUF3388 domain-containing protein -
  PSR12_RS05605 (PSR12_05605) - 1170102..1171031 (+) 930 WP_274771977.1 helix-turn-helix domain-containing protein -
  PSR12_RS05610 (PSR12_05610) pgsA 1171079..1171657 (+) 579 WP_004224936.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PSR12_RS05615 (PSR12_05615) cinA 1171674..1172933 (+) 1260 WP_054550950.1 competence/damage-inducible protein A Machinery gene
  PSR12_RS05620 (PSR12_05620) recA 1173095..1174156 (+) 1062 WP_274771982.1 recombinase RecA Machinery gene
  PSR12_RS05625 (PSR12_05625) rny 1174672..1176231 (+) 1560 WP_274771984.1 ribonuclease Y -
  PSR12_RS05630 (PSR12_05630) - 1176460..1177188 (+) 729 WP_221682731.1 Wzz/FepE/Etk N-terminal domain-containing protein -
  PSR12_RS05635 (PSR12_05635) - 1177188..1177889 (+) 702 WP_237497167.1 CpsD/CapB family tyrosine-protein kinase -
  PSR12_RS05640 (PSR12_05640) - 1177930..1178685 (+) 756 WP_306832313.1 CpsB/CapC family capsule biosynthesis tyrosine phosphatase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37990.14 Da        Isoelectric Point: 4.6805

>NTDB_id=792401 PSR12_RS05620 WP_274771982.1 1173095..1174156(+) (recA) [Lysinibacillus sp. G01H]
MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDLEIATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQASGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIVGNRT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENTAVLEDIANK
IRASYGIAASSYTIAAHDEEEMDEELMLLLEEE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=792401 PSR12_RS05620 WP_274771982.1 1173095..1174156(+) (recA) [Lysinibacillus sp. G01H]
ATGAGTGATCGTAAAGCAGCCTTAGAACAGGCTCTAAAACAAATTGAGAAGAATTTTGGTAAAGGTTCCATCATGAAACT
TGGTGAAAAAACTGATTTAGAAATTGCAACATCTTCAAGTGGGTCACTAGCACTTGATGCTGCATTAGGAGTGGGTGGAT
ATCCACGTGGACGTATTATTGAAGTATACGGTCCCGAATCGTCTGGTAAAACAACAGTTGCTCTACATGCCATTGCTGAA
GTACAGGCATCAGGTGGACAAGCAGCATTTATCGACGCGGAGCATGCATTAGATCCAATCTATGCACAAAAATTAGGTGT
GAATATTGATGAGCTATTATTATCACAGCCCGACACAGGTGAGCAAGCACTTGAAATTGCAGAAGCATTAGTGCGTAGTG
GAGCTATTGATATTATTGTTATTGACTCGGTTGCTGCCTTAGTGCCAAAAGCTGAAATTGAAGGGGATATGGGTGACTCT
CATGTCGGCTTACAAGCTCGTCTAATGTCTCAAGCTTTACGTAAACTTTCAGGTGCGATTAATAAATCAAAAACGATTGC
TATTTTCATTAACCAAATTCGTGAAAAAATTGGTGTCATGTTCGGTAATCCAGAAACAACACCAGGTGGACGTGCGCTTA
AATTCTACAGCTCTGTCCGTTTAGAAGTGCGTCGTGCAGAAGCTATTAAGCAAGGTAATGATATTGTTGGTAACCGTACT
AAAATTAAAATTGTAAAAAATAAAGTAGCACCACCTTTCCGTACAGCTGAAGTAGATATTATGTATGGAGAAGGGATTTC
TAAAGAAGGCGAGACAGTCGATTTAGGCGTGGAATTAGACATTGTGCAAAAAAGCGGTTCTTGGTATGCATATGGCGATG
AGCGCTTAGGTCAAGGACGAGAAAATGCTAAACAGTATTTAAAAGAAAATACTGCTGTCCTAGAAGACATAGCAAATAAA
ATCCGAGCTTCTTATGGTATTGCGGCTTCTTCTTATACAATTGCGGCCCATGATGAAGAAGAGATGGATGAAGAATTAAT
GTTGCTTCTGGAAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.544

92.635

0.802
  recA Latilactobacillus sakei subsp. sakei 23K

75.767

92.351

0.7
  recA Streptococcus mitis SK321

64.266

100

0.657
  recA Streptococcus mitis NCTC 12261

63.989

100

0.654
  recA Streptococcus mutans UA159

64.756

98.867

0.64
  recA Streptococcus pneumoniae R6

67.576

93.484

0.632
  recA Streptococcus pneumoniae Rx1

67.576

93.484

0.632
  recA Streptococcus pneumoniae D39

67.576

93.484

0.632
  recA Streptococcus pneumoniae TIGR4

67.576

93.484

0.632
  recA Lactococcus lactis subsp. cremoris KW2

66.667

93.484

0.623
  recA Streptococcus pyogenes NZ131

67.073

92.918

0.623
  recA Neisseria gonorrhoeae strain FA1090

65.35

93.201

0.609
  recA Neisseria gonorrhoeae MS11

65.35

93.201

0.609
  recA Neisseria gonorrhoeae MS11

65.35

93.201

0.609
  recA Acinetobacter baylyi ADP1

61.494

98.584

0.606
  recA Acinetobacter baumannii D1279779

61.032

98.867

0.603
  recA Helicobacter pylori strain NCTC11637

64.615

92.068

0.595
  recA Helicobacter pylori 26695

64.308

92.068

0.592
  recA Ralstonia pseudosolanacearum GMI1000

63.914

92.635

0.592
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

92.351

0.586
  recA Glaesserella parasuis strain SC1401

60

97.734

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.19

92.351

0.584
  recA Vibrio cholerae strain A1552

63.75

90.652

0.578
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.75

90.652

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

91.501

0.572
  recA Pseudomonas stutzeri DSM 10701

62.928

90.935

0.572