Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | PV010_RS06700 | Genome accession | NZ_CP118364 |
| Coordinates | 1390215..1391276 (+) | Length | 353 a.a. |
| NCBI ID | WP_003812760.1 | Uniprot ID | K0MEU1 |
| Organism | Bordetella pertussis strain SA30 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1345698..1391276 | 1390215..1391276 | within | 0 |
Gene organization within MGE regions
Location: 1345698..1391276
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PV010_RS06445 (PV010_06460) | - | 1345749..1346552 (+) | 804 | WP_010931015.1 | ABC transporter permease | - |
| PV010_RS06450 (PV010_06465) | - | 1346554..1348188 (+) | 1635 | WP_010931014.1 | ABC transporter ATP-binding protein | - |
| PV010_RS06455 (PV010_06470) | - | 1348272..1349333 (+) | 1062 | WP_010931013.1 | LacI family DNA-binding transcriptional regulator | - |
| PV010_RS06460 (PV010_06475) | - | 1349532..1349801 (+) | 270 | WP_004567322.1 | hypothetical protein | - |
| PV010_RS06465 (PV010_06480) | - | 1349805..1350329 (+) | 525 | WP_010931012.1 | AlpA family transcriptional regulator | - |
| PV010_RS06470 (PV010_06485) | - | 1350338..1350670 (-) | 333 | WP_224019493.1 | MerR family DNA-binding protein | - |
| PV010_RS06475 (PV010_06490) | - | 1350745..1351695 (+) | 951 | WP_010929591.1 | IS481-like element IS481 family transposase | - |
| PV010_RS06480 (PV010_06495) | - | 1351692..1352726 (-) | 1035 | WP_010931011.1 | metal-dependent hydrolase | - |
| PV010_RS06485 (PV010_06500) | - | 1352835..1353473 (+) | 639 | WP_003816758.1 | DedA family protein | - |
| PV010_RS06495 (PV010_06510) | - | 1353768..1353995 (+) | 228 | WP_019247724.1 | GNAT family N-acetyltransferase | - |
| PV010_RS06500 (PV010_06515) | - | 1354118..1354831 (+) | 714 | WP_003820420.1 | bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG | - |
| PV010_RS06505 (PV010_06520) | - | 1355076..1356026 (-) | 951 | WP_005013747.1 | IS481-like element IS481 family transposase | - |
| PV010_RS06510 (PV010_06525) | - | 1356130..1356411 (+) | 282 | WP_010931009.1 | hypothetical protein | - |
| PV010_RS06515 (PV010_06530) | - | 1356526..1357974 (-) | 1449 | WP_010931008.1 | PLP-dependent aminotransferase family protein | - |
| PV010_RS06520 (PV010_06535) | - | 1358085..1359035 (+) | 951 | WP_005012808.1 | IS481-like element IS481 family transposase | - |
| PV010_RS06525 (PV010_06540) | dut | 1359032..1359481 (-) | 450 | WP_003816756.1 | dUTP diphosphatase | - |
| PV010_RS06530 (PV010_06545) | - | 1359676..1360626 (+) | 951 | WP_010929584.1 | IS481-like element IS481 family transposase | - |
| PV010_RS06535 (PV010_06550) | rpmI | 1360962..1361159 (+) | 198 | WP_003812834.1 | 50S ribosomal protein L35 | - |
| PV010_RS06540 (PV010_06555) | rplT | 1361175..1361534 (+) | 360 | WP_003812832.1 | 50S ribosomal protein L20 | - |
| PV010_RS06545 (PV010_06560) | pheS | 1361609..1362631 (+) | 1023 | WP_010926359.1 | phenylalanine--tRNA ligase subunit alpha | - |
| PV010_RS06550 (PV010_06565) | pheT | 1362644..1365061 (+) | 2418 | WP_010931007.1 | phenylalanine--tRNA ligase subunit beta | - |
| PV010_RS06555 (PV010_06570) | - | 1365067..1365408 (+) | 342 | WP_010931006.1 | integration host factor subunit alpha | - |
| PV010_RS06560 (PV010_06575) | - | 1365467..1365877 (+) | 411 | WP_003812822.1 | MerR family transcriptional regulator | - |
| PV010_RS06570 (PV010_06585) | - | 1366377..1367468 (-) | 1092 | WP_010931005.1 | hypothetical protein | - |
| PV010_RS06575 (PV010_06590) | - | 1367652..1368248 (+) | 597 | WP_010931004.1 | lipoprotein | - |
| PV010_RS06580 (PV010_06595) | - | 1368348..1368530 (-) | 183 | WP_004567479.1 | hypothetical protein | - |
| PV010_RS06585 (PV010_06600) | - | 1368641..1369591 (+) | 951 | WP_010929591.1 | IS481-like element IS481 family transposase | - |
| PV010_RS06595 (PV010_06610) | - | 1370329..1370661 (+) | 333 | WP_023853503.1 | hypothetical protein | - |
| PV010_RS06600 (PV010_06615) | - | 1370803..1371543 (-) | 741 | WP_023853497.1 | endonuclease | - |
| PV010_RS06605 (PV010_06620) | - | 1371719..1371850 (+) | 132 | WP_003812797.1 | entericidin A/B family lipoprotein | - |
| PV010_RS06610 (PV010_06625) | - | 1371976..1372410 (+) | 435 | WP_010931001.1 | lipoprotein | - |
| PV010_RS06615 (PV010_06630) | - | 1372412..1372825 (+) | 414 | WP_003820436.1 | membrane protein | - |
| PV010_RS06620 (PV010_06635) | - | 1372932..1374227 (+) | 1296 | WP_010926366.1 | aspartate carbamoyltransferase | - |
| PV010_RS06625 (PV010_06640) | - | 1374267..1375166 (-) | 900 | WP_003812788.1 | recombination-associated protein RdgC | - |
| PV010_RS06630 | - | 1375320..1375535 (+) | 216 | Protein_1302 | hypothetical protein | - |
| PV010_RS06635 (PV010_06650) | - | 1375788..1377095 (-) | 1308 | WP_023994674.1 | CaiB/BaiF CoA-transferase family protein | - |
| PV010_RS06640 (PV010_06655) | - | 1377112..1377999 (-) | 888 | WP_010930998.1 | LysR substrate-binding domain-containing protein | - |
| PV010_RS06645 (PV010_06660) | - | 1378215..1379378 (+) | 1164 | WP_010930997.1 | hypothetical protein | - |
| PV010_RS06650 (PV010_06665) | - | 1379386..1379778 (+) | 393 | WP_010930996.1 | Zn-ribbon domain-containing OB-fold protein | - |
| PV010_RS06655 (PV010_06670) | - | 1379779..1380222 (+) | 444 | WP_003820449.1 | MaoC/PaaZ C-terminal domain-containing protein | - |
| PV010_RS06660 (PV010_06675) | - | 1380223..1380969 (+) | 747 | WP_010930995.1 | SDR family oxidoreductase | - |
| PV010_RS06665 (PV010_06680) | - | 1381007..1382044 (+) | 1038 | WP_004567469.1 | ABC transporter substrate-binding protein | - |
| PV010_RS06670 (PV010_06685) | - | 1382073..1383824 (+) | 1752 | WP_010930994.1 | iron ABC transporter permease | - |
| PV010_RS06675 (PV010_06690) | - | 1383821..1384885 (+) | 1065 | WP_010930993.1 | ABC transporter ATP-binding protein | - |
| PV010_RS06680 (PV010_06695) | - | 1384913..1385689 (+) | 777 | WP_015041674.1 | enoyl-CoA hydratase/isomerase family protein | - |
| PV010_RS06685 (PV010_06700) | - | 1385941..1387617 (-) | 1677 | WP_003820458.1 | MFS transporter | - |
| PV010_RS06690 (PV010_06705) | - | 1387812..1389170 (-) | 1359 | WP_010930991.1 | sensor histidine kinase | - |
| PV010_RS06695 (PV010_06710) | - | 1389286..1389975 (-) | 690 | WP_003812762.1 | response regulator transcription factor | - |
| PV010_RS06700 (PV010_06715) | recA | 1390215..1391276 (+) | 1062 | WP_003812760.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37949.30 Da Isoelectric Point: 5.1842
>NTDB_id=792246 PV010_RS06700 WP_003812760.1 1390215..1391276(+) (recA) [Bordetella pertussis strain SA30]
MDDKTSKAAAAEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK
TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPK
AEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIK
KGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGSGISREGEIIDLGVQANVVDKSGAWYSYSGNRIGQGKDNVREYLKEH
KEMAIEIENKVRENQGIVSRAATFPASEAEDGE
MDDKTSKAAAAEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK
TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPK
AEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIK
KGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGSGISREGEIIDLGVQANVVDKSGAWYSYSGNRIGQGKDNVREYLKEH
KEMAIEIENKVRENQGIVSRAATFPASEAEDGE
Nucleotide
Download Length: 1062 bp
>NTDB_id=792246 PV010_RS06700 WP_003812760.1 1390215..1391276(+) (recA) [Bordetella pertussis strain SA30]
ATGGACGACAAAACCAGCAAGGCCGCCGCGGCCGAGAAAGCCAAGGCGCTGGCCGCCGCGCTGTCGCAGATCGAAAAGCA
GTTCGGCAAGGGCTCGATCATGCGCTATGGCGACAACGAGGTCGAACACGACATCCAGGTCGTGTCCACCGGTTCGCTGG
GGCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGATCGAGGTCTACGGCCCCGAGTCGTCCGGCAAG
ACCACGCTCACGCTGCAGGTCATCGCCGAAATGCAGAAGCTGGGCGGCACCTGCGCCTTCGTCGACGCCGAACACGCGCT
GGACGTGCAATACGCCTCCAAGCTGGGGGTCAACCTGACCGACCTGCTGATCTCCCAGCCGGACACGGGCGAGCAGGCCC
TCGAGATCACCGACGCGCTGGTGCGCTCGGGCTCGGTCGACCTGATCGTCATCGACTCGGTCGCGGCGCTGGTGCCCAAG
GCCGAAATCGAAGGCGAGATGGGCGACTCCCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGAC
GGCCACCATCAAGCGCACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACC
CCGAAACCACCACCGGCGGCAACGCGCTCAAGTTCTATTCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCCATCAAG
AAGGGCGACGAGGTGGTCGGCAACGAAACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCAAGCAGGCCGA
GTTCGACATCATGTATGGCAGCGGCATCTCGCGCGAAGGCGAAATCATCGACCTGGGCGTGCAAGCCAATGTGGTCGACA
AGTCCGGCGCCTGGTACAGCTACAGCGGCAACCGCATCGGCCAGGGCAAGGACAATGTGCGCGAGTACCTGAAAGAGCAC
AAGGAAATGGCCATCGAGATCGAAAACAAGGTGCGCGAGAACCAGGGCATAGTCAGCCGCGCCGCCACCTTTCCGGCCAG
CGAAGCCGAAGACGGCGAATAA
ATGGACGACAAAACCAGCAAGGCCGCCGCGGCCGAGAAAGCCAAGGCGCTGGCCGCCGCGCTGTCGCAGATCGAAAAGCA
GTTCGGCAAGGGCTCGATCATGCGCTATGGCGACAACGAGGTCGAACACGACATCCAGGTCGTGTCCACCGGTTCGCTGG
GGCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGATCGAGGTCTACGGCCCCGAGTCGTCCGGCAAG
ACCACGCTCACGCTGCAGGTCATCGCCGAAATGCAGAAGCTGGGCGGCACCTGCGCCTTCGTCGACGCCGAACACGCGCT
GGACGTGCAATACGCCTCCAAGCTGGGGGTCAACCTGACCGACCTGCTGATCTCCCAGCCGGACACGGGCGAGCAGGCCC
TCGAGATCACCGACGCGCTGGTGCGCTCGGGCTCGGTCGACCTGATCGTCATCGACTCGGTCGCGGCGCTGGTGCCCAAG
GCCGAAATCGAAGGCGAGATGGGCGACTCCCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGAC
GGCCACCATCAAGCGCACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACC
CCGAAACCACCACCGGCGGCAACGCGCTCAAGTTCTATTCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCCATCAAG
AAGGGCGACGAGGTGGTCGGCAACGAAACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCAAGCAGGCCGA
GTTCGACATCATGTATGGCAGCGGCATCTCGCGCGAAGGCGAAATCATCGACCTGGGCGTGCAAGCCAATGTGGTCGACA
AGTCCGGCGCCTGGTACAGCTACAGCGGCAACCGCATCGGCCAGGGCAAGGACAATGTGCGCGAGTACCTGAAAGAGCAC
AAGGAAATGGCCATCGAGATCGAAAACAAGGTGCGCGAGAACCAGGGCATAGTCAGCCGCGCCGCCACCTTTCCGGCCAG
CGAAGCCGAAGACGGCGAATAA
Similar proteins
Only experimentally validated proteins are listed.